Parental gene:

CDK4, ENSCJAG00000006697

Aliases:None
Description:cyclin-dependent kinase 4 [Source:HGNC Symbol;Acc:1773]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:46575744..46579877(-)


>ENSCJAG00000006697
ATGGCTACCTCTCGATATGAGCCAGTGGCTGAAATTGGTGTCGGTGCCTATGGGACAGTGTACAAGGCCCGTGATCCCCA
CAGTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTCCCCAATGGAGGAGCTGGAGGAGGCCTTCCCGTCAGCACAGTTC
GTGAAGTGGCCTTACTGAGGCGACTGGAGGCTTTTGAGCATCCCAACGTTGTCCGGCTGATGGATGTCTGTGCCACATCG
CGAACTGACCGAGAGATCAAGGTAACCCTGGTGTTTGAGCATGTAGACCAAGATCTAAGGACATATCTGGACAAGGCACC
CCCACCAGGCTTGCCTGCAGAGACCATCAAGGATCTGATGCGCCAGTTTCTAAGAGGCCTAGATTTTCTTCATGCCAATT
GCATCGTTCACCGAGATCTGAAGCCAGAGAACATTCTGGTGACAAGTGGTGGAACAGTCAAGCTGGCTGACTTTGGCCTG
GCCAGAATCTACAGCTACCAGATGGCACTTACACCTGTGGTGGTTACACTCTGGTACCGAGCTCCCGAAGTTCTTCTGCA
GTCCACATATGCAACACCTGTGGACATGTGGAGTGTTGGCTGTATCTTTGCTGAGATGTTTCGTCGAAAGCCTCTCTTCT
GTGGAAACTCTGAAGCTGACCAGTTGGGCAAAATCTTTGACCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGAGAT
GTATCTCTGCCCCGTGGAGCCTTTCACCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTTGGG
AGCACATCTGCTGTTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAGCACTCTTACC
TACATAAGGATGAAGGTAATCCGGAGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 15 .82 RPM
SRP051959_skeletal_muscle 16 .66 RPM
SRP051959_lymph_node 15 .23 RPM
SRP051959_lung 13 .76 RPM
SRP051959_liver 11 .50 RPM
SRP051959_kidney 20 .37 RPM
SRP051959_heart 14 .26 RPM
SRP051959_colon 16 .35 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007160 possible_ortholog 1 retrogene
retro_btau_738,
Canis familiaris ENSCAFG00000000280 ortholog_one2one 1 retrogene
retro_cfam_690,
Callithrix jacchus ENSCJAG00000007001 within_species_paralog 2 retrogenes
retro_cjac_1846, retro_cjac_671,
Callithrix jacchus ENSCJAG00000012261 other_paralog 1 retrogene
retro_cjac_961,
Callithrix jacchus ENSCJAG00000014175 other_paralog 1 retrogene
retro_cjac_4070,
Callithrix jacchus ENSCJAG00000020258 other_paralog 1 retrogene
retro_cjac_1522,
Cavia porcellus ENSCPOG00000002670 possible_ortholog 1 retrogene
retro_cpor_457,
Dasypus novemcinctus ENSDNOG00000014245 possible_ortholog 1 retrogene
retro_dnov_145,
Felis catus ENSFCAG00000029663 ortholog_one2one 1 retrogene
retro_fcat_516,
Gorilla gorilla ENSGGOG00000001404 ortholog_one2one 1 retrogene
retro_ggor_275,
Macropus eugenii ENSMEUG00000014609 ortholog_many2many 1 retrogene
retro_meug_23,
Microcebus murinus ENSMICG00000003789 ortholog_one2one 1 retrogene
retro_mmur_893,
Myotis lucifugus ENSMLUG00000023651 ortholog_one2one 2 retrogenes
retro_mluc_1137, retro_mluc_354,
Macaca mulatta ENSMMUG00000023694 ortholog_one2one 1 retrogene
retro_mmul_401,
Mus musculus ENSMUSG00000006728 ortholog_one2one 5 retrogenes
retro_mmus_1219, retro_mmus_1298, retro_mmus_2878, retro_mmus_3109, retro_mmus_636,
Nomascus leucogenys ENSNLEG00000017205 ortholog_one2one 1 retrogene
retro_nleu_1847,
Pan troglodytes ENSPTRG00000005147 ortholog_one2one 1 retrogene
retro_ptro_180,
Tarsius syrichta ENSTSYG00000011937 ortholog_one2one 3 retrogenes
retro_tsyr_1383, retro_tsyr_1701, retro_tsyr_544,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2163 85.38 83.44
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2. retro_cjac_2891 96.53 85.43
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3. retro_cjac_2951 68.63 50.33
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Download FASTA sequences of all ENSCJAG00000006697 retrocopies