Parental gene:

SNRPF, ENSCJAG00000002705

Aliases:None
Description:small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:85895666..85902983(+)


>ENSCJAG00000002705
ATGAGTTTACCCCTTAATCCCAAACCTTTCCTCAATGGACTAACAGGAAAGCCAGTGATGGTGAAACTTAAGTGGGGGAT
GGAGTACAAGGGCTACCTGGTATCTGTAGATGGCTACATGAACATGCAGCTTGCAAATACAGAAGAATACATAGATGGAG
CATTGTCTGGACATCTGGGTGAAGTTTTAATAAGGTGTAATAATGTCCTTTATATCAGAGGTGTGGAAGAAGAGGAAGAA
GATGGGGAAATGAGAGAATAG

Library Parental gene expression (RPM)
SRP051959_spleen 6 .09 RPM
SRP051959_skeletal_muscle 5 .53 RPM
SRP051959_lymph_node 6 .55 RPM
SRP051959_lung 5 .86 RPM
SRP051959_liver 4 .27 RPM
SRP051959_kidney 6 .37 RPM
SRP051959_heart 5 .63 RPM
SRP051959_colon 5 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002166 possible_ortholog 3 retrogenes
retro_amel_1239, retro_amel_42, retro_amel_883,
Canis familiaris ENSCAFG00000006395 ortholog_one2one 6 retrogenes
retro_cfam_110, retro_cfam_1975, retro_cfam_372, retro_cfam_619, retro_cfam_742, retro_cfam_763,
Callithrix jacchus ENSCJAG00000002482 within_species_paralog 4 retrogenes
retro_cjac_1173, retro_cjac_1278, retro_cjac_3176, retro_cjac_3248,
Erinaceus europaeus ENSEEUG00000013509 possible_ortholog 4 retrogenes
retro_eeur_241, retro_eeur_465, retro_eeur_467, retro_eeur_636,
Echinops telfairi ENSETEG00000001558 ortholog_one2one 3 retrogenes
retro_etel_1765, retro_etel_1846, retro_etel_560,
Felis catus ENSFCAG00000029966 ortholog_one2one 4 retrogenes
retro_fcat_280, retro_fcat_66, retro_fcat_77, retro_fcat_861,
Latimeria chalumnae ENSLACG00000002456 possible_ortholog 1 retrogene
retro_lcha_73,
Loxodonta africana ENSLAFG00000017426 possible_ortholog 1 retrogene
retro_lafr_241,
Monodelphis domestica ENSMODG00000008091 possible_ortholog 3 retrogenes
retro_mdom_550, retro_mdom_780, retro_mdom_811,
Pelodiscus sinensis ENSPSIG00000016462 possible_ortholog 2 retrogenes
retro_psin_31, retro_psin_54,
Sarcophilus harrisii ENSSHAG00000012294 possible_ortholog 1 retrogene
retro_shar_468,
Tarsius syrichta ENSTSYG00000006837 possible_ortholog 4 retrogenes
retro_tsyr_1239, retro_tsyr_1782, retro_tsyr_192, retro_tsyr_2115,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1705 78.57 96.51
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2. retro_cjac_3039 80.95 95.35
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Download FASTA sequences of all ENSCJAG00000002705 retrocopies