Parental gene:

SF3A3, ENSCJAG00000002176

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:7:72357514..72389140(-)


>ENSCJAG00000002176
ATGGAGACGATACTGGAGCAACAGCGGCGCTATCATGAGGAGAAAGAACGGCTCATGGACGTCATGGCCAAAGAGATGCT
CACTAAGAAGTCCACGCTCCGGGACCAGATCAATTCTGATCACCGCACTCGGGCCATGCAAGATAGGTATATGGAGGTCA
GTGGGAACCTGAGGGATTTGTATGATGATAAGGATGGATTACGAAAGGAGGAGCTCAATGCCATTTCAGGACCCAATGAG
TTTGCTGAATTCTATAATAGACTCAAGCAAATAAAGGAATTCCACCGGAAGCACCCAAATGAGATCTGTGTGCCAATGTC
AGTGGAATTTGAAGAGCTCCTGAAGGCTCGAGAGAATCCAAGTGAAGAGGCACAAAACTTGGTGGAGTTCACAGATGAAG
AGGGATATGGTCGTTACCTTGATCTCCATGATTGTTACCTCAAGTACATTAACCTGAAGGCATCTGAGAAGCTGGATTAT
ATCACATACCTGTCCATTTTTGACCAATTATTTGACATTCCTAAAGAAAGGAAGAATGCAGAATATAAGAGATACCTAGA
GATGCTGCTTGAGTACCTTCAGGATTACACGGATAGAGTGAAGCCTCTCCAAGATCAGAATGAACTTTTTGGGAAGATTC
AGGCTGAGTTTGAGAAGAAATGGGAGAATGGGACCTTTCCTGGATGGCCGAAAGAGACAAGCAGTGCTCTGACCCATGCT
GGAGCCCATCTTGACCTCTCCGCATTCTCCTCCTGGGAGGAGTTGGCCTCTCTGGGTTTGGACAGATTGAAATCTGCTCT
CTTAGCTTTAGGCTTGAAATGTGGCGGGACCCTAGAAGAGCGAGCCCAGAGACTATTCAGCACCAAAGGAAAGTCCCTGG
AATCACTTGATACCTCTTTGTTTGCCAAAAATCCCAAGTCAAAGGGCACCAAGCGAGACACTGAGAGGAACAAAGACATT
GCTTTTCTAGAAGCCCAAATCTATGAATACGTAGAGATTCTCGGGGAACAGCGACATCTCACGCATGAAAATGTACAACG
CAAGCAAGCAAGGACAGGAGAAGAGCGAGAAGAGGAGGAAGAAGAGCAGATTAGTGAGAGTGAGAGTGAAGATGAAGAGA
ATGAGATCATTTACAACCCCAAAAACCTGCCGCTTGGCTGGGATGGCAAACCCATTCCCTACTGGCTATATAAGCTTCAT
GGCCTAAATATCAACTACAACTGTGAGATTTGTGGAAACTACACCTACCGAGGGCCCAAAGCCTTCCAGCGACACTTTGC
TGAATGGCGTCATGCTCATGGCATGAGGTGTTTGGGCATCCCAAATACTGCCCACTTTGCTAATGTGACACAGATTGAAG
ATGCTGTCTCCTTGTGGGCCAAACTGAAATTGCAGAAGGCTTCAGAACGATGGCAGCCTGACACTGAGGAAGAATATGAA
GACTCGAGTGGGAATGTTGTGAATAAGAAGACATATGAGGATCTGAAAAGACAAGGACTGCTCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 40 .11 RPM
SRP051959_skeletal_muscle 19 .30 RPM
SRP051959_lymph_node 46 .73 RPM
SRP051959_lung 35 .41 RPM
SRP051959_liver 26 .60 RPM
SRP051959_kidney 32 .64 RPM
SRP051959_heart 24 .17 RPM
SRP051959_colon 27 .42 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001262 ortholog_one2one 1 retrogene
retro_amel_485,
Canis familiaris ENSCAFG00000003222 ortholog_one2many 1 retrogene
retro_cfam_176,
Cavia porcellus ENSCPOG00000008660 ortholog_one2one 1 retrogene
retro_cpor_658,
Homo sapiens ENSG00000183431 ortholog_one2one 2 retrogenes
retro_hsap_2441, retro_hsap_937,
Macropus eugenii ENSMEUG00000002534 ortholog_one2one 3 retrogenes
retro_meug_1135, retro_meug_1346, retro_meug_642,
Macaca mulatta ENSMMUG00000023199 ortholog_one2one 1 retrogene
retro_mmul_631,
Monodelphis domestica ENSMODG00000017729 ortholog_one2many 1 retrogene
retro_mdom_269,
Nomascus leucogenys ENSNLEG00000011720 ortholog_one2one 1 retrogene
retro_nleu_2775,
Pan troglodytes ENSPTRG00000000559 ortholog_one2one 2 retrogenes
retro_ptro_1411, retro_ptro_649,
Sorex araneus ENSSARG00000014204 ortholog_one2one 1 retrogene
retro_sara_407,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_4109 84.48 53.89
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Download FASTA sequences of all ENSCJAG00000002176 retrocopies