Parental gene:

RPL18, ENSCJAG00000000377

Aliases:None
Description:ribosomal protein L18 [Source:HGNC Symbol;Acc:10310]
Organism:Marmoset (Callithrix jacchus)
Coordinates:22:40549385..40553029(-)


>ENSCJAG00000000377
ATGGGAGTTGACATCCGTCACAACAAGGACCGAAAGGTTCGGCGCAAGGAGCCCAAGAGCCAGGATATTTACCTGAGGCT
GTTGGTCAAGCTGTACAGGTTTCTGGCCAGGCGAACCAACTCCACATTTAACCAGGTCGTGCTGAAGAGGTTGTTTATGA
GTCGCACCAACCGGCCACCTCTGTCCCTTTCCCGGATGATCCGGAAGATGAAGCTTCCTGGCCGGGAAAACAAAACAGCC
GTGGTTGTGGGGACCGTAACGGATGACGTGCGGGTTCAGGAGGTGCCTAAGCTGAAGGTGTGTGCCCTGCGTGTGACCAG
CCGGGCCCGCAGCCGTATCCTCAAGGCGGGGGGCAAGATCCTCACTTTTGACCAGCTGGCCCTGGACTCCCCCAAGGGCT
GCGGGACCGTCCTGCTCTCCGGTCCTCGCAAGGGCCGAGAGGTGTACCGGCATTTCGGCAAGGCCCCAGGAACTCCGCAC
AGCCACACCAAACCCTACGTCCGCTCCAAGGGCCGGAAGTTCGAGCGGGCCAGAGGCCGACGGGCCAGCCGAGGCTACAA
AAACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 97 .77 RPM
SRP051959_skeletal_muscle 75 .56 RPM
SRP051959_lymph_node 138 .74 RPM
SRP051959_lung 89 .21 RPM
SRP051959_liver 97 .10 RPM
SRP051959_kidney 77 .14 RPM
SRP051959_heart 65 .09 RPM
SRP051959_colon 107 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000009140 ortholog_one2one 6 retrogenes
retro_chof_1408, retro_chof_1668, retro_chof_1697, retro_chof_2025, retro_chof_427, retro_chof_436,
Felis catus ENSFCAG00000008652 possible_ortholog 4 retrogenes
retro_fcat_1055, retro_fcat_1268, retro_fcat_1596, retro_fcat_718,
Homo sapiens ENSG00000063177 ortholog_one2one 11 retrogenes
retro_hsap_1073, retro_hsap_1202, retro_hsap_1331, retro_hsap_1617, retro_hsap_1706, retro_hsap_3235, retro_hsap_3794, retro_hsap_3895, retro_hsap_4001, retro_hsap_4111, retro_hsap_772,
Gorilla gorilla ENSGGOG00000024878 ortholog_one2many 7 retrogenes
retro_ggor_1038, retro_ggor_1280, retro_ggor_2200, retro_ggor_2550, retro_ggor_2624, retro_ggor_847, retro_ggor_937,
Macropus eugenii ENSMEUG00000000640 ortholog_one2one 1 retrogene
retro_meug_1568,
Macaca mulatta ENSMMUG00000022158 ortholog_one2many 3 retrogenes
retro_mmul_32, retro_mmul_55, retro_mmul_92,
Monodelphis domestica ENSMODG00000014099 ortholog_one2many 1 retrogene
retro_mdom_906,
Mustela putorius furo ENSMPUG00000003891 possible_ortholog 4 retrogenes
retro_mputfur_135, retro_mputfur_1410, retro_mputfur_529, retro_mputfur_974,
Nomascus leucogenys ENSNLEG00000004537 possible_ortholog 11 retrogenes
retro_nleu_1124, retro_nleu_1136, retro_nleu_1410, retro_nleu_1799, retro_nleu_2006, retro_nleu_2380, retro_nleu_2464, retro_nleu_2597, retro_nleu_547, retro_nleu_577, retro_nleu_976,
Otolemur garnettii ENSOGAG00000003562 possible_ortholog 16 retrogenes
retro_ogar_1167, retro_ogar_1474, retro_ogar_1563, retro_ogar_1753, retro_ogar_1978, retro_ogar_2394, retro_ogar_2419, retro_ogar_2527, retro_ogar_2613, retro_ogar_2833, retro_ogar_3319, retro_ogar_3456, retro_ogar_3458, retro_ogar_3459, retro_ogar_492, retro_ogar_996,
Oreochromis niloticus ENSONIG00000006539 ortholog_one2one 1 retrogene
retro_onil_43,
Pan troglodytes ENSPTRG00000011245 ortholog_one2one 10 retrogenes
retro_ptro_1084, retro_ptro_1155, retro_ptro_2187, retro_ptro_2574, retro_ptro_2649, retro_ptro_2790, retro_ptro_540, retro_ptro_730, retro_ptro_822, retro_ptro_908,
Rattus norvegicus ENSRNOG00000021035 possible_ortholog 14 retrogenes
retro_rnor_1068, retro_rnor_1072, retro_rnor_1154, retro_rnor_1186, retro_rnor_1337, retro_rnor_1359, retro_rnor_2174, retro_rnor_2224, retro_rnor_2847, retro_rnor_2890, retro_rnor_516, retro_rnor_685, retro_rnor_856, retro_rnor_857,
Sarcophilus harrisii ENSSHAG00000006564 ortholog_one2one 2 retrogenes
retro_shar_571, retro_shar_659,
Sus scrofa ENSSSCG00000025928 possible_ortholog 5 retrogenes
retro_sscr_1028, retro_sscr_118, retro_sscr_836, retro_sscr_864, retro_sscr_925,
Ictidomys tridecemlineatus ENSSTOG00000012258 possible_ortholog 5 retrogenes
retro_itri_261, retro_itri_323, retro_itri_828, retro_itri_853, retro_itri_957,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_529 61.86 50.53
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2. retro_cjac_1659 68.03 62.77
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3. retro_cjac_2114 95.24 100.00
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4. retro_cjac_2296 80.00 100.00
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Download FASTA sequences of all ENSCJAG00000000377 retrocopies