RetrogeneDB - Parental gene ENSCAFG00000003967 details

							
>ENSCAFG00000003967
ATGGGAGTCGACATCCGCCACAACAAGGACCGAAAGGTTCGGCGCAAGGAGCCCAAGAGCCAGGACATCTACCTGAGACT

GTTGGTTAAGCTGTACAGGTTTCTGGCCAGACGAACCAACTCTACCTTTAACCAGGTTGTGTTGAAGAGGTTGTTCATGA

GTCGCACCAACCGGCCACCTCTGTCCCTTTCCCGGATGATCCGGAAGATGAAACTGCCTGGCCGGGAAAACAAAACAGCT

GTGGTTGTAGGAACCATAACGGATGATGTGCGTGTCCAGGAGGTGCCCAAGCTGAAGGTGTGTGCACTGCGCGTGAGTAG

CCGTGCCCGGAGCCGCATCCTCAAAGCTGGAGGCAAGATCCTCACCTTCGATCAGTTGGCCCTGGACTCCCCTAAGGGTT

GTGGCACCGTCTTACTCTCTGGTCCACGCAAGGGCCGAGAGGTGTACAGACACTTTGGCAAGGCCCCAGGAACCCCACAC

AGCCACACCAAACCCTACGTGAGATCCAAGGGCCGGAAGTTCGAGCGTGCCAGAGGCCGCAGGGCCAGCCGAGGCTACAA

AAACTAA

Library	Parental gene expression (RPM)
SRP017611_brain	62 .08 RPM
SRP017611_kidney	536 .75 RPM
SRP017611_liver	161 .41 RPM
SRP012049_cerebellum	188 .66 RPM

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000014872	ortholog_one2one	3 retrogenes	retro_amel_1718, retro_amel_640, retro_amel_740,
Bos taurus	ENSBTAG00000015388	ortholog_one2one	1 retrogene	retro_btau_845,
Choloepus hoffmanni	ENSCHOG00000009140	ortholog_one2one	6 retrogenes	retro_chof_1408, retro_chof_1668, retro_chof_1697, retro_chof_2025, retro_chof_427, retro_chof_436,
Equus caballus	ENSECAG00000021927	ortholog_one2one	3 retrogenes	retro_ecab_478, retro_ecab_530, retro_ecab_880,
Erinaceus europaeus	ENSEEUG00000015872	ortholog_one2one	5 retrogenes	retro_eeur_176, retro_eeur_299, retro_eeur_381, retro_eeur_419, retro_eeur_437,
Echinops telfairi	ENSETEG00000013157	ortholog_one2one	6 retrogenes	retro_etel_1059, retro_etel_1211, retro_etel_1342, retro_etel_1373, retro_etel_1391, retro_etel_1715,
Felis catus	ENSFCAG00000008652	ortholog_one2one	4 retrogenes	retro_fcat_1055, retro_fcat_1268, retro_fcat_1596, retro_fcat_718,
Gorilla gorilla	ENSGGOG00000024878	possible_ortholog	7 retrogenes	retro_ggor_1038, retro_ggor_1280, retro_ggor_2200, retro_ggor_2550, retro_ggor_2624, retro_ggor_847, retro_ggor_937,
Loxodonta africana	ENSLAFG00000031267	ortholog_one2one	1 retrogene	retro_lafr_879,
Macropus eugenii	ENSMEUG00000000640	ortholog_one2one	1 retrogene	retro_meug_1568,
Myotis lucifugus	ENSMLUG00000009286	ortholog_one2one	12 retrogenes	retro_mluc_1440, retro_mluc_1442, retro_mluc_1462, retro_mluc_1736, retro_mluc_1791, retro_mluc_1912, retro_mluc_2023, retro_mluc_480, retro_mluc_729, retro_mluc_786, retro_mluc_886, retro_mluc_904,
Macaca mulatta	ENSMMUG00000022158	possible_ortholog	3 retrogenes	retro_mmul_32, retro_mmul_55, retro_mmul_92,
Monodelphis domestica	ENSMODG00000014099	ortholog_one2many	1 retrogene	retro_mdom_906,
Mustela putorius furo	ENSMPUG00000003891	ortholog_one2many	4 retrogenes	retro_mputfur_135, retro_mputfur_1410, retro_mputfur_529, retro_mputfur_974,
Nomascus leucogenys	ENSNLEG00000004537	ortholog_one2one	11 retrogenes	retro_nleu_1124, retro_nleu_1136, retro_nleu_1410, retro_nleu_1799, retro_nleu_2006, retro_nleu_2380, retro_nleu_2464, retro_nleu_2597, retro_nleu_547, retro_nleu_577, retro_nleu_976,
Otolemur garnettii	ENSOGAG00000003562	possible_ortholog	16 retrogenes	retro_ogar_1167, retro_ogar_1474, retro_ogar_1563, retro_ogar_1753, retro_ogar_1978, retro_ogar_2394, retro_ogar_2419, retro_ogar_2527, retro_ogar_2613, retro_ogar_2833, retro_ogar_3319, retro_ogar_3456, retro_ogar_3458, retro_ogar_3459, retro_ogar_492, retro_ogar_996,
Oreochromis niloticus	ENSONIG00000006539	ortholog_one2one	1 retrogene	retro_onil_43,
Pongo abelii	ENSPPYG00000010206	ortholog_one2one	6 retrogenes	retro_pabe_1003, retro_pabe_1337, retro_pabe_1402, retro_pabe_2681, retro_pabe_3100, retro_pabe_3176,
Pteropus vampyrus	ENSPVAG00000009524	ortholog_one2one	10 retrogenes	retro_pvam_101, retro_pvam_1034, retro_pvam_1244, retro_pvam_1376, retro_pvam_1444, retro_pvam_427, retro_pvam_785, retro_pvam_883, retro_pvam_969, retro_pvam_990,
Rattus norvegicus	ENSRNOG00000021035	possible_ortholog	14 retrogenes	retro_rnor_1068, retro_rnor_1072, retro_rnor_1154, retro_rnor_1186, retro_rnor_1337, retro_rnor_1359, retro_rnor_2174, retro_rnor_2224, retro_rnor_2847, retro_rnor_2890, retro_rnor_516, retro_rnor_685, retro_rnor_856, retro_rnor_857,
Sarcophilus harrisii	ENSSHAG00000006564	ortholog_one2one	2 retrogenes	retro_shar_571, retro_shar_659,
Sus scrofa	ENSSSCG00000025928	ortholog_one2one	5 retrogenes	retro_sscr_1028, retro_sscr_118, retro_sscr_836, retro_sscr_864, retro_sscr_925,
Ictidomys tridecemlineatus	ENSSTOG00000012258	possible_ortholog	5 retrogenes	retro_itri_261, retro_itri_323, retro_itri_828, retro_itri_853, retro_itri_957,
Tupaia belangeri	ENSTBEG00000001594	ortholog_one2one	18 retrogenes	retro_tbel_1006, retro_tbel_126, retro_tbel_1591, retro_tbel_1599, retro_tbel_1600, retro_tbel_1719, retro_tbel_2618, retro_tbel_2628, retro_tbel_277, retro_tbel_2984, retro_tbel_3527, retro_tbel_3529, retro_tbel_3608, retro_tbel_3609, retro_tbel_4409, retro_tbel_4473, retro_tbel_4590, retro_tbel_737,
Tursiops truncatus	ENSTTRG00000008187	ortholog_one2one	3 retrogenes	retro_ttru_1127, retro_ttru_1770, retro_ttru_42,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_cfam_304	96.81	100.00	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_cfam_1285	62.50	92.55	Please wait, loading	Please wait, loading	Please wait, loading
3.	retro_cfam_1383	62.90	96.81	Please wait, loading	Please wait, loading	Please wait, loading
4.	retro_cfam_1507	71.57	54.26	Please wait, loading	Please wait, loading	Please wait, loading
5.	retro_cfam_1853	94.68	99.47	Please wait, loading	Please wait, loading	Please wait, loading
6.	retro_cfam_2044	97.34	100.00	Please wait, loading	Please wait, loading	Please wait, loading
7.	retro_cfam_2199	71.05	99.47	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSCAFG00000003967 retrocopies

Parental gene:	RPL18, ENSCAFG00000003967
Aliases:	None
Description:	Canis lupus familiaris ribosomal protein L18 (RPL18), mRNA. [Source:RefSeq mRNA;Acc:NM_001251958]
Organism:	*Dog (Canis familiaris)*
Coordinates:	1:107690020..107694586(+)

Parental gene:

RPL18, ENSCAFG00000003967