Parental gene: | BT.92088, ENSBTAG00000014827 |
| Aliases: | None |
| Description: | ubiquilin-1 [Source:RefSeq peptide;Acc:NP_777053] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 8:78223446..78279808(-) |
>ENSBTAG00000014827
ATGGCCGAGAATAGTGAAAGCGGCGGCCCTCCGAGTTCCCAGGACAACGCCGCCGCGGCCGAAGGTGCCGGCGCCCCTGC
CGCCACCGCCTCCACGGAACCCAAGATCATGAAAGTCACCGTGAAGACCCCGAAGGAGAAGGAGGAGTTCGCAGTGCCCG
AGAACAGCTCCGTCCAGCAGTTCAAGGAAGAAATCTCTAAACGTTTCAAATCACATACTGACCAACTTGTGTTGATATTT
GCGGGAAAAATTTTAAAAGATCAAGATACTTTGAGTCAGCATGGAATTCACGATGGACTTACTGTTCACCTTGTCATCAA
AACACAAAACAGGCCTCAGGATCATTCAGCTCAACAAACAAATGCCAGTGGAACCAGTGCTACCACATCATCAGCTCCTA
GTAGTAACTCCACATCTGGTTCTGCCACTAGCAGCCCTTTTGGTTTAGGTGGCCTTGGAGGACTTGCAGGTCTGAGTAGC
TTGGGTTTGAATACTACCAACTTCTCTGAACTACAGAGCCAGATGCAGCGGCAACTTATGTCCAATCCTGAAATGATGGT
CCAGATCATGGAGAATCCCTTTGTCCAGAGCATGCTTTCAAATCCTGACCTGATGAGGCAGTTAATTATGGCCAATCCAC
AAATGCAACAGTTGATACAGAGAAATCCAGAAATTAGTCATATGCTAAATAACCCAGATATTATGAGACAAACATTGGAA
CTTGCTAGGAATCCAGCAATGATGCAGGAAATGATGAGAAACCAGGACCGAGCCTTGAGCAACCTGGAAAGCATCCCAGG
GGGATACAATGCTTTACGGCGCATGTACACAGATATTCAGGAACCCATGTTGAGTGCTGCACAAGAACAGTTTGGTGGTA
ATCCGTTTGCTTCGTTAGTGAGCAATACATCGTCAGGTGAAGGTAGTCAGCCTTCCCGTACAGAAAATAGAGATCCATTA
CCCAATCCGTGGGCTCCACAGGCTTCTCAGAGTTCATCAGCTTCCAGTGGCACCACCAGCTCAGTGGGGGGCACTAGTGG
TAGTGCTGCTGGTGGTACTGCTGGGCAGAGTTCTGCTGCGCCAAATTTGGGACCTGGAGTAGGAGCCAGTATGTTCAATA
CACCAGGAATGCAGAGCTTGTTGCAGCAAATAACTGAAAACCCACAACTTATGCAAAACATGTTGTCTGCCCCCTACATG
AGAAGCATGATGCAGTCACTAAGCCAGAACCCTGACCTTGCTGCACAGATGATGCTGAATAATCCCCTATTTGCTGGAAA
TCCTCAGCTTCAAGAACAAATGAGACAACAGCTCCCAACTTTCCTTCAACAAATGCAGAATCCTGATACGTTATCGGCTA
TGTCAAACCCTAGAGCAATGCAGGCCTTATTACAGATTCAGCAGGGTTTACAGACCTTAGCAACTGAAGCCCCCGGCCTC
ATCCCAGGGTTTACTCCTGGCCTGGGGGCATTAGGAAGTACTGGAGGCTCTTCAGGAACCAATGGCTCTACTTCTACATC
TAGCGAAAACCCAAGTCCCACAGTAGGAACCACCGAACCTGGACACCAGCAGTTTATCCAGCAAATGCTGCAGGCTCTTG
CTGGAGTGAATCCTCAGCTACAGAATCCAGAAGTTAGATTTCAGCAGCAACTGGAACAGCTCAGTGCAATGGGATTTTTG
AACCGTGAAGCAAACTTGCAAGCGCTAATAGCCACAGGAGGGGATATCAATGCGGCTATTGAAAGGTTACTGGGCTCTCA
GCATCATAGCAGCATTTCTGTATCTTGA
ATGGCCGAGAATAGTGAAAGCGGCGGCCCTCCGAGTTCCCAGGACAACGCCGCCGCGGCCGAAGGTGCCGGCGCCCCTGC
CGCCACCGCCTCCACGGAACCCAAGATCATGAAAGTCACCGTGAAGACCCCGAAGGAGAAGGAGGAGTTCGCAGTGCCCG
AGAACAGCTCCGTCCAGCAGTTCAAGGAAGAAATCTCTAAACGTTTCAAATCACATACTGACCAACTTGTGTTGATATTT
GCGGGAAAAATTTTAAAAGATCAAGATACTTTGAGTCAGCATGGAATTCACGATGGACTTACTGTTCACCTTGTCATCAA
AACACAAAACAGGCCTCAGGATCATTCAGCTCAACAAACAAATGCCAGTGGAACCAGTGCTACCACATCATCAGCTCCTA
GTAGTAACTCCACATCTGGTTCTGCCACTAGCAGCCCTTTTGGTTTAGGTGGCCTTGGAGGACTTGCAGGTCTGAGTAGC
TTGGGTTTGAATACTACCAACTTCTCTGAACTACAGAGCCAGATGCAGCGGCAACTTATGTCCAATCCTGAAATGATGGT
CCAGATCATGGAGAATCCCTTTGTCCAGAGCATGCTTTCAAATCCTGACCTGATGAGGCAGTTAATTATGGCCAATCCAC
AAATGCAACAGTTGATACAGAGAAATCCAGAAATTAGTCATATGCTAAATAACCCAGATATTATGAGACAAACATTGGAA
CTTGCTAGGAATCCAGCAATGATGCAGGAAATGATGAGAAACCAGGACCGAGCCTTGAGCAACCTGGAAAGCATCCCAGG
GGGATACAATGCTTTACGGCGCATGTACACAGATATTCAGGAACCCATGTTGAGTGCTGCACAAGAACAGTTTGGTGGTA
ATCCGTTTGCTTCGTTAGTGAGCAATACATCGTCAGGTGAAGGTAGTCAGCCTTCCCGTACAGAAAATAGAGATCCATTA
CCCAATCCGTGGGCTCCACAGGCTTCTCAGAGTTCATCAGCTTCCAGTGGCACCACCAGCTCAGTGGGGGGCACTAGTGG
TAGTGCTGCTGGTGGTACTGCTGGGCAGAGTTCTGCTGCGCCAAATTTGGGACCTGGAGTAGGAGCCAGTATGTTCAATA
CACCAGGAATGCAGAGCTTGTTGCAGCAAATAACTGAAAACCCACAACTTATGCAAAACATGTTGTCTGCCCCCTACATG
AGAAGCATGATGCAGTCACTAAGCCAGAACCCTGACCTTGCTGCACAGATGATGCTGAATAATCCCCTATTTGCTGGAAA
TCCTCAGCTTCAAGAACAAATGAGACAACAGCTCCCAACTTTCCTTCAACAAATGCAGAATCCTGATACGTTATCGGCTA
TGTCAAACCCTAGAGCAATGCAGGCCTTATTACAGATTCAGCAGGGTTTACAGACCTTAGCAACTGAAGCCCCCGGCCTC
ATCCCAGGGTTTACTCCTGGCCTGGGGGCATTAGGAAGTACTGGAGGCTCTTCAGGAACCAATGGCTCTACTTCTACATC
TAGCGAAAACCCAAGTCCCACAGTAGGAACCACCGAACCTGGACACCAGCAGTTTATCCAGCAAATGCTGCAGGCTCTTG
CTGGAGTGAATCCTCAGCTACAGAATCCAGAAGTTAGATTTCAGCAGCAACTGGAACAGCTCAGTGCAATGGGATTTTTG
AACCGTGAAGCAAACTTGCAAGCGCTAATAGCCACAGGAGGGGATATCAATGCGGCTATTGAAAGGTTACTGGGCTCTCA
GCATCATAGCAGCATTTCTGTATCTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 78 .52 RPM |
| SRP017611_kidney | 96 .91 RPM |
| SRP017611_liver | 53 .76 RPM |
| ERP005899_muscle | 67 .15 RPM |
| ERP005899_liver | 30 .28 RPM |
| SRP030211_testis | 102 .46 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000001435 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000003609 | ortholog_one2one | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000004849 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000012687 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000015266 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000019110 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000002822 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000015049 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000135018 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002036 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000002028 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000005312 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000003306 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000012947 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019323 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000021055 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000019282 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013462 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000004696 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_188 | 78.88 | 85.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_1087 | 96.34 | 74.02 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000014827 retrocopies