RetrogeneDB ID: retro_mluc_33

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429936:1788647..1790525(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000007552
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000002036
• Aliases: None
• Description: None

Sequence

>retro_mluc_33
ATGGCTGAGAACGGCGAGAGCAGCGGCCCCCCGCGCCCCTCCCGCGGCCCTGCTGCGGCCCAAGGCTCTGCCTCTCCCCC
GGCCGAGCCCAAAATCATCAAAGTCACCGTGAAGACCCCCAAAGAGAAAGAGGAGTTCGCGGTGCCCGAGAATAGCTCGG
TGCAGCAGTTCAAGGAAGCGATCTCGAAACGCTTCAAATCCCAAACGGATCAGCTGGTGCTGATCTTCGCCGGAAAAATC
CTAAAAGATCAAGATACCTTGAGCCAGCACGGCATCCATGATGGACTGACCGTTCACCTTGTCATCAAAAGCCAGAACCG
ACCTCAGGGCCAGACCACACAGCCCAGTACGACCGCGGGAACGACTACTACTACCACCACCGCGTCGACTCCCAGGAGTA
ACTCCACACCTATTTCCACAAATAGCAACCCGTTTGGGTTGGGGAGCCTGGGAGGACTTGCGAGCCTTAGCAGCCTGGGC
TTGACCTCGACCAGCTTCACCGAGCTGCAGAACCAGATGCAGCAGCAGCTCCTGTCCAGCCCTGAGATGATGCTCCAAAT
CATGGAAAATCCCTTTGTTCAGAGCATGCTTTCGAATCCCGATCTGATGAGGCAGCTCATCATGGCCAATCCACAGATGC
AACAATTGATTCAGAGAAACCCAGAAATCAGTCACCTGCTCAACAACCCAGATATAATGAGGCAGACCCTCGAAATCGCC
AGGAATCCAGCCATGATGCAGGAGATGATGAGAAATCAAGACCTGGCCCTCAGCAATCTCGAAAGCATCCCAGGGGGCTA
TAATGCCCTACGGCGCATGTACACTGACATTCAAGAGCCGATGCTGAATGCTGCACAAGAGCAGTTTGGGGGTAATCCGT
TTGCCTCCGTGGGGAGCAGTTCCTCCACCGGCGAAGGTTCGCAGCCTTCCCGCACCGAAAATCGAGATCCGCTGCCCAAT
CCGTGGGCACCACCGTCGGCTACTCACAGTTCGGCAACCACCGGCACCACCTCGAGCAGCGGCAGCGGGTCCAGCGGTAG
CTCCAATAATCCCGGGAACACTATGGCCGCGGCCAATTATGTCGCCAGCGTCTTCAGCACCCCGGGAATGCAGAGCCTGC
TGCAACAGATCACTGAAAACCCCCAGCTGATCCAGAATATGCTGTCTGCGCCCTACATGAGAAGCATGATGCAGTCGCTG
ACCCAGAATCCGGATTTGGCTGCACAGATGATGCTGAATAACCCCGTGTTCTCGGGAAATCCTCAGCTACAGGAGCAGGT
TCGTCCGCAGGTCCCTTCTTTCCTGCAGCAGATGCAGAGTCCAGACACGCTGTCAGCCATGACAAACCCGAGAGCAATGC
AGGCGCTAATGCAGATCCAGCAGGGGCTACAGACATTAGCCTCTGAAGCGCCTGGCCTCATTCCAAGCTTCACTCCAGGT
GTGGGGGTGGGGGTGCTGGGAACCGCTATAGGCCCTGTAGGCCCAGTCACACCCATAGGTCCCATCGGCCCCATTGTGCC
GTTTACCCCCATTGGGCCTATTGGGCCCATAGGACCCACTGGCCCTGCGGGTCCTCCTGGCTCCACTGGTTCTGGCAGCA
CCCCTGGGCCCACCGTGCCTAGCTCTGCATCCAGTGAAACCACGAGCCCAACATCAGAATCTGGACCCAGCCAGCAGTTC
ATTCAGCAAATGGTGCAGGCTCTGGCTGGAGGAAATCCTCCTCAGCTGCCAATTCCAGAAGTCAGATTTCAGCAACAACT
GGAACAGCTCAACGCAATGGGCTTCTTAAACCGCGAAGCTAACTTGCAGGCTCTAATAGCAACAGGAGGCGACATCAATG
CAGCCATTGAGCGGCTGCTGGGCTCCCAGCCATCCTAA

Alignment

ORF - retro_mluc_33 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.14 %
• Parental protein coverage: 85.2 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAESGESGGPPSSQDSAVAAEGTGAPAAAAAAEPKIMKVTVKTPKEKEEFAVPEDSSVQQFKEEISKRFK
          MAE.GES.GPP.......AA.G...P.....AEPKI.KVTVKTPKEKEEFAVPE.SSVQQFKE.ISKRFK
Retrocopy MAENGESSGPPRPSRGPAAAQGSASPP----AEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFK

Parental  SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRSQDHSAQQTNTSGSNVTTSSA--PNSNST
          S.TDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK.QNR.Q....Q...T.G...TT..A..P.SNST
Retrocopy SQTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKSQNRPQGQTTQPSTTAGTTTTTTTASTPRSNST

Parental  SGSAPSNPFGLGALGGLAGLSSLGLNSTNFSELQSQMQRQLMSNPEMMVQIMENPFVQSMLSNPDLMRQL
          ..S..SNPFGLG.LGGLA.LSSLGL.ST.F.ELQ.QMQ.QL.S.PEMM.QIMENPFVQSMLSNPDLMRQL
Retrocopy PISTNSNPFGLGSLGGLASLSSLGLTSTSFTELQNQMQQQLLSSPEMMLQIMENPFVQSMLSNPDLMRQL

Parental  IMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTD
          IMANPQMQQLIQRNPEISH.LNNPDIMRQTLE.ARNPAMMQEMMRNQD.ALSNLESIPGGYNALRRMYTD
Retrocopy IMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTD

Parental  IQEPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQASQSSSASIGTTNAVGGTGGS
          IQEPML.AAQEQFGGNPFAS..S..S.GEGSQPSRTENRDPLPNPWAP.....SSA..GTT.......GS
Retrocopy IQEPMLNAAQEQFGGNPFASVGSSSSTGEGSQPSRTENRDPLPNPWAPPSATHSSATTGTTSS----SGS

Parental  TASSTAGQSSAPSLGPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMML
          ..S................AS.F.TPGMQSLLQQITENPQL.QNMLSAPYMRSMMQSL.QNPDLAAQMML
Retrocopy GSSGSSNNPGNTMAAANYVASVFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLTQNPDLAAQMML

Parental  NNPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLG
          NNP.F.GNPQLQEQ.R.Q.P.FLQQMQ.PDTLSAM.NPRAMQAL.QIQQGLQTLA.EAPGLIP.FTPG.G
Retrocopy NNPVFSGNPQLQEQVRPQVPSFLQQMQSPDTLSAMTNPRAMQALMQIQQGLQTLASEAPGLIPSFTPGVG

Parental  TLGSTGGSSGTNG
          ..G..G...G..G
Retrocopy -VGVLGTAIGPVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_33 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 20 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014827	2 retrocopies	retro_btau_1087, retro_btau_188,
Canis familiaris	ENSCAFG00000001435	1 retrocopy	retro_cfam_236,
Callithrix jacchus	ENSCJAG00000003609	2 retrocopies	retro_cjac_3977, retro_cjac_4067,
Cavia porcellus	ENSCPOG00000004849	1 retrocopy	retro_cpor_113,
Dasypus novemcinctus	ENSDNOG00000012687	1 retrocopy	retro_dnov_14,
Dipodomys ordii	ENSDORG00000015266	1 retrocopy	retro_dord_680,
Equus caballus	ENSECAG00000019110	1 retrocopy	retro_ecab_1063,
Echinops telfairi	ENSETEG00000002822	1 retrocopy	retro_etel_39,
Felis catus	ENSFCAG00000015049	1 retrocopy	retro_fcat_83,
Homo sapiens	ENSG00000135018	1 retrocopy	retro_hsap_58,
Myotis lucifugus	ENSMLUG00000002036	2 retrocopies	retro_mluc_1774, retro_mluc_33 ,
Mustela putorius furo	ENSMPUG00000002028	1 retrocopy	retro_mputfur_55,
Mus musculus	ENSMUSG00000005312	1 retrocopy	retro_mmus_83,
Nomascus leucogenys	ENSNLEG00000003306	1 retrocopy	retro_nleu_31,
Otolemur garnettii	ENSOGAG00000012947	1 retrocopy	retro_ogar_276,
Pongo abelii	ENSPPYG00000019323	1 retrocopy	retro_pabe_87,
Pan troglodytes	ENSPTRG00000021055	1 retrocopy	retro_ptro_93,
Rattus norvegicus	ENSRNOG00000019282	1 retrocopy	retro_rnor_339,
Ictidomys tridecemlineatus	ENSSTOG00000013462	1 retrocopy	retro_itri_157,
Tursiops truncatus	ENSTTRG00000004696	1 retrocopy	retro_ttru_1475,