RetrogeneDB ID: retro_mputfur_55

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897496.1:76964..78836(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018630
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: UBQLN1
• Ensembl ID: ENSMPUG00000002028
• Aliases: None
• Description: ubiquilin 1 [Source:HGNC Symbol;Acc:12508]

Sequence

>retro_mputfur_55
ATGGCTGAGAACGGCGAGAGTAGCGGCCCCCCGCGCCCCTCCCGCGGCCCTGCTGCGGCCCAAGGCCCTGCCTCTGCCCC
GGCCGAGCCCAAAATCATCAAAGTCACTGTGAAGACCCCCAAAGAGAAAGAGGAGTTCGCGGTGCCCGAGAATAGCTCAG
TCCAGCAGTTTAAGGAAGCGATTTCGAAACGCTTCAAATCCCAAACCGATCAGCTAGTGTTGATTTTTGCCGGAAAAATC
TTGAAAGATCAAGATACCCTGATCCAGCATGGCATCCATGATGGACTGACTGTTCATCTTGTAATTAAAAGCCAGAACCG
ACCTCAGGGCCAGTCCACACAGCCTAGTAATGCCGCGGGAACTAACACTACCTCCGCGTCGACTCCCAGGAGTAACTCCA
CATCTATTTCCACAAATAGCAACCCGTTTGGGCTGGGGAGCTTGGGAGGACTTGCAGGCCTTAGCAGCCTGGGCTTGAGC
TCGACCAACTTCTCTGAGCTCCAGAACCAGATGCAGCAGCAGCTCCTGTCCAGCCCTGAGATGATGATCCAAATCATGGA
AAATCCCTTTGTTCAGAGCATGCTTTCAAACCCCGATCTAATGAGGCAGCTCATTATGGCCAATCCACAGATGCAGCAAT
TGATTCAGAGAAACCCAGAAATCAGTCACCTGCTCAACAACCCAGATATAATGAGGCAGACCCTCGAAATTGCCAGGAAT
CCGGCCATGATGCAAGAGATGATGAGAAATCAAGATCTGGCTCTCAGCAATCTTGAAAGCATCCCAGGTGGCTACAATGC
CCTACGACGCATGTACACTGACATTCAAGAACCCATGCTGAATGCTGCACAAGAGCAGTTTGGGGGTAATCCATTTGCTT
CAGTGGGGAGCAATTCCACCTCCGGGGAAGGTACACAGCCTTCCCGCACAGAAAATCGGGATCCACTACCCAATCCATGG
GCACCACCACAGGCTACCCAGAGTTCTGCAACCACCAGCACAACCACAAGCAGTGGCAGTGGGTCTGGCAGTAGCTCCAG
CAGTGCTACCGGGAACACTGTGGCTGCAGCGAACTATGTCGCCAGCATCTTCAGTACCCCAGGAATGCAGAGCTTGCTGC
AACAGATAACTGAAAATCCCCAACTGATCCAGAATATGCTGTCTGCACCCTACATGAGAAGCATGATGCAGTCACTGAGC
CAGAATCCAGATTTGGCTGCACAGATGATGCTGAATAGCCCCGTGTTTACTGCAAATCCTCAGTTGCAGGAGCAGATGCG
TCCACAGCTCCCAGCTTTCCTGCAGCAGATGCAGAATCCAGACACACTGTCAGCCATGTCAAACCCAAGAGCAATGCAGG
CTTTAATGCAGATCCAGCAGGGGCTACAGACATTAGCCACTGAAGCTCCTGGCCTTATTCCAAGCTTCACTCCAGGTGTG
GGGGTAGGGGTGCTGGGAACCGCTATAGGCCCTGTAGGCCCAGTCACACCCATAGGCCCCATAGGCCCCATAGTCCCGTT
CACTCCCATAGGCCCCATTGGGCCCATAGGACCCACTGGCCCTGCAGGCCCTGGCTCCACTGGCTCTGGTGGTCCCCCTG
GGCCCACTGTTTCTAGTTCTACACCCAGTGAAACCACTAGCCCAACATCAGAATCTGGACCCAACCAGCAGTTCATTCAG
CAAATGGTGCAGGCTCTGGCTGGGGCAAGTCCTCCACAGCTGCCGAATCCAGAAGTCAGATTTCAGCAACAACTGGAACA
GCTCAACGCAATGGGGTTCTTAAACCGTGAGGCAAACTTGCAGGCTCTAATAGCAACAGGAGGCGACATCAATGCTGCCA
TTGAGAGGCTGCTGGGCTCCCAGCCATCGTAA

Alignment

ORF - retro_mputfur_55 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.69 %
• Parental protein coverage: 85.08 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAESGESGGPPSSQDSAAAAEGAGAPAAAASAEPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFK
          MAE.GES.GPP......AAA.G.....A.A.AEPKI.KVTVKTPKEKEEFAVPENSSVQQFKE.ISKRFK
Retrocopy MAENGESSGPPRPSRGPAAAQGP----ASAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFK

Parental  SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDHSAQQTNTSGSNVTTSSAPSTNSTSG
          S.TDQLVLIFAGKILKDQDTL.QHGIHDGLTVHLVIK.QNRPQ..S.Q..N..G.N.T..S.P..NSTS.
Retrocopy SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAGTNTTSASTPRSNSTSI

Parental  SATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQMQRQLMSNPEMMVQIMENPFVQSMLSNPDLMRQLIM
          S..SNPFGLG.LGGLAGLSSLGL..TNFSELQ.QMQ.QL.S.PEMM.QIMENPFVQSMLSNPDLMRQLIM
Retrocopy STNSNPFGLGSLGGLAGLSSLGLSSTNFSELQNQMQQQLLSSPEMMIQIMENPFVQSMLSNPDLMRQLIM

Parental  ANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQ
          ANPQMQQLIQRNPEISH.LNNPDIMRQTLE.ARNPAMMQEMMRNQD.ALSNLESIPGGYNALRRMYTDIQ
Retrocopy ANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQ

Parental  EPMLSAAQEQFGGNPFASLVSNTSSGEGSQPSRTENRDPLPNPWAPQASQSSSASSGTTSTVGGTGANAA
          EPML.AAQEQFGGNPFAS..SN..SGEG.QPSRTENRDPLPNPWAP.....SSA...TTST....G....
Retrocopy EPMLNAAQEQFGGNPFASVGSNSTSGEGTQPSRTENRDPLPNPWAPPQATQSSA---TTSTTTSSGSGSG

Parental  SGTSGQSSSAPNLGPGVGASMFNTPGMQSLLQQITENPQLMQNMLSAPYMRSMMQSLSQNPDLAAQMMLN
          S..S............V.AS.F.TPGMQSLLQQITENPQL.QNMLSAPYMRSMMQSLSQNPDLAAQMMLN
Retrocopy SSSSSATGNTVAAANYV-ASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLN

Parental  NPLFAGNPQLQEQMRQQLPTFLQQMQNPDTLSAMSNPRAMQALLQIQQGLQTLATEAPGLIPGFTPGLGA
          .P.F..NPQLQEQMR.QLP.FLQQMQNPDTLSAMSNPRAMQAL.QIQQGLQTLATEAPGLIP.FTPG.G.
Retrocopy SPVFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGVG-

Parental  LGSTGGSSGSNG
          .G..G...G..G
Retrocopy VGVLGTAIGPVG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_55 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_55 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 20 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014827	2 retrocopies	retro_btau_1087, retro_btau_188,
Canis familiaris	ENSCAFG00000001435	1 retrocopy	retro_cfam_236,
Callithrix jacchus	ENSCJAG00000003609	2 retrocopies	retro_cjac_3977, retro_cjac_4067,
Cavia porcellus	ENSCPOG00000004849	1 retrocopy	retro_cpor_113,
Dasypus novemcinctus	ENSDNOG00000012687	1 retrocopy	retro_dnov_14,
Dipodomys ordii	ENSDORG00000015266	1 retrocopy	retro_dord_680,
Equus caballus	ENSECAG00000019110	1 retrocopy	retro_ecab_1063,
Echinops telfairi	ENSETEG00000002822	1 retrocopy	retro_etel_39,
Felis catus	ENSFCAG00000015049	1 retrocopy	retro_fcat_83,
Homo sapiens	ENSG00000135018	1 retrocopy	retro_hsap_58,
Myotis lucifugus	ENSMLUG00000002036	2 retrocopies	retro_mluc_1774, retro_mluc_33,
Mustela putorius furo	ENSMPUG00000002028	1 retrocopy	retro_mputfur_55 ,
Mus musculus	ENSMUSG00000005312	1 retrocopy	retro_mmus_83,
Nomascus leucogenys	ENSNLEG00000003306	1 retrocopy	retro_nleu_31,
Otolemur garnettii	ENSOGAG00000012947	1 retrocopy	retro_ogar_276,
Pongo abelii	ENSPPYG00000019323	1 retrocopy	retro_pabe_87,
Pan troglodytes	ENSPTRG00000021055	1 retrocopy	retro_ptro_93,
Rattus norvegicus	ENSRNOG00000019282	1 retrocopy	retro_rnor_339,
Ictidomys tridecemlineatus	ENSSTOG00000013462	1 retrocopy	retro_itri_157,
Tursiops truncatus	ENSTTRG00000004696	1 retrocopy	retro_ttru_1475,