Parental gene:

BT.49851, ENSBTAG00000009389

Aliases:HNRNPH1, HNRPH1
Description:heterogeneous nuclear ribonucleoprotein H [Source:RefSeq peptide;Acc:NP_001180163]
Organism:Cow (Bos taurus)
Coordinates:7:1593462..1602463(+)


>ENSBTAG00000009389
ATGATGTTGGGCACCGAAGGCGGTGAGGGGTTCGTGGTGAAGGTCCGGGGCTTGCCTTGGTCTTGCTCTGCAGACGAAGT
GCAGCGGTTTTTTTCTGACTGCAAAATTCAAAATGGGGCTCAAGGTATTCGTTTCATCTACACCAGAGAAGGCAGACCGA
GTGGCGAGGCTTTTGTTGAACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACAC
AGATATGTTGAAGTATTCAAGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACAC
GGCCAATGATGGCTTTGTACGGCTTAGAGGACTCCCATTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGT
TGGAAATCGTGCCAAATGGGATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCT
TCACAGGAAATAGCTGAAAAGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATCGAAATCTTTAAGAGCAG
TCGAGCTGAAGTTAGAACTCACTATGATCCACCACGAAAACTTATGGCCATGCAGCGACCAGGTCCCTATGACAGACCTG
GGGCTGGCAGAGGGTATAACAGCATTGGAAGAGGAGCTGGCTTTGAAAGGATGAGGCGTGGTGCTTATGGTGGAGGTTAT
GGAGGCTATGATGATTATAATGGCTATAATGATGGCTATGGATTTGGGTCAGATAGATTCGGAAGAGACCTCAATTACTG
TTTTTCAGGAATGTCAGATCACAGATACGGGGATGGTGGCTCTACTTTCCAGAGCACAACAGGACACTGTGTTCACATGC
GGGGATTACCTTACAGAGCTACTGAGAATGACATTTATAATTTTTTTTCACCACTCAACCCTGTGAGAGTACATATTGAA
ATTGGTCCTGATGGCAGAGTAACTGGTGAAGCAGATGTCGAGTTTGCAACTCATGAAGATGCTGTGGCAGCTATGTCAAA
AGACAAAGCAAATATGCAACACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTACGAAC
ACAGATATGTAGAACTCTTCTTGAATTCTACAGCAGGAGCAAGCGGTGGTGCTTATGGTAGCCAAATGATGGGAGGCATG
GGCTTGTCAAACCAGTCCAGTTACGGGGGCCCGGCCAGCCAGCAGCTGAGTGGTGGTTATGGAGGCGGCTATGGTGGCCA
GAGCAGCATGAGTGGATACGGCAGCCAAGGAGCAGTGAACAGCAGCTACTACAGTAGCGGAAGCCGAACATCTATGGGAG
TGAACGGAATGGGAGGGATGTCTAGCATGTCCAGTATGAGTGGTGGATGGGGAATGTAA

Library Parental gene expression (RPM)
SRP017611_brain 202 .63 RPM
SRP017611_kidney 325 .58 RPM
SRP017611_liver 108 .73 RPM
ERP005899_muscle 169 .72 RPM
ERP005899_liver 365 .38 RPM
SRP030211_testis 306 .76 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008888 possible_ortholog 2 retrogenes
retro_amel_57, retro_amel_9,
Bos taurus ENSBTAG00000014316 within_species_paralog 2 retrogenes
retro_btau_1504, retro_btau_470,
Bos taurus ENSBTAG00000020513 within_species_paralog 1 retrogene
retro_btau_42,
Bos taurus ENSBTAG00000021838 other_paralog 1 retrogene
retro_btau_847,
Canis familiaris ENSCAFG00000000336 ortholog_one2one 2 retrogenes
retro_cfam_200, retro_cfam_230,
Choloepus hoffmanni ENSCHOG00000003841 possible_ortholog 4 retrogenes
retro_chof_1051, retro_chof_1235, retro_chof_1491, retro_chof_2650,
Callithrix jacchus ENSCJAG00000009931 possible_ortholog 1 retrogene
retro_cjac_127,
Cavia porcellus ENSCPOG00000001485 possible_ortholog 5 retrogenes
retro_cpor_1065, retro_cpor_1094, retro_cpor_1095, retro_cpor_121, retro_cpor_711,
Dipodomys ordii ENSDORG00000005453 ortholog_one2one 1 retrogene
retro_dord_3,
Equus caballus ENSECAG00000014429 possible_ortholog 1 retrogene
retro_ecab_94,
Echinops telfairi ENSETEG00000011303 possible_ortholog 1 retrogene
retro_etel_50,
Felis catus ENSFCAG00000001204 possible_ortholog 2 retrogenes
retro_fcat_131, retro_fcat_27,
Homo sapiens ENSG00000169045 possible_ortholog 2 retrogenes
retro_hsap_3322, retro_hsap_4911,
Gorilla gorilla ENSGGOG00000025844 ortholog_one2one 2 retrogenes
retro_ggor_1299, retro_ggor_177,
Myotis lucifugus ENSMLUG00000016625 possible_ortholog 1 retrogene
retro_mluc_124,
Macaca mulatta ENSMMUG00000010843 possible_ortholog 1 retrogene
retro_mmul_2,
Monodelphis domestica ENSMODG00000009436 possible_ortholog 3 retrogenes
retro_mdom_1301, retro_mdom_1302, retro_mdom_333,
Mustela putorius furo ENSMPUG00000000693 ortholog_one2one 1 retrogene
retro_mputfur_156,
Mus musculus ENSMUSG00000007850 ortholog_one2one 1 retrogene
retro_mmus_142,
Nomascus leucogenys ENSNLEG00000026658 ortholog_one2one 3 retrogenes
retro_nleu_1668, retro_nleu_28, retro_nleu_48,
Otolemur garnettii ENSOGAG00000012631 possible_ortholog 2 retrogenes
retro_ogar_208, retro_ogar_498,
Ochotona princeps ENSOPRG00000003513 possible_ortholog 1 retrogene
retro_opri_11,
Procavia capensis ENSPCAG00000006715 possible_ortholog 1 retrogene
retro_pcap_4,
Pongo abelii ENSPPYG00000016121 possible_ortholog 1 retrogene
retro_pabe_110,
Pteropus vampyrus ENSPVAG00000007670 possible_ortholog 1 retrogene
retro_pvam_23,
Rattus norvegicus ENSRNOG00000003399 possible_ortholog 1 retrogene
retro_rnor_340,
Sorex araneus ENSSARG00000003024 possible_ortholog 1 retrogene
retro_sara_29,
Sarcophilus harrisii ENSSHAG00000018204 possible_ortholog 1 retrogene
retro_shar_674,
Sus scrofa ENSSSCG00000014022 possible_ortholog 1 retrogene
retro_sscr_70,
Ictidomys tridecemlineatus ENSSTOG00000016376 ortholog_one2one 2 retrogenes
retro_itri_66, retro_itri_78,
Vicugna pacos ENSVPAG00000007485 possible_ortholog 2 retrogenes
retro_vpac_594, retro_vpac_614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_130 94.84 94.49
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Download FASTA sequences of all ENSBTAG00000009389 retrocopies