Parental gene:

HNRNPA2B1, ENSBTAG00000005726

Aliases:HNRNPA2B1, HNRPA2B1
Description:Heterogeneous nuclear ribonucleoproteins A2/B1 [Source:UniProtKB/Swiss-Prot;Acc:Q2HJ60]
Organism:Cow (Bos taurus)
Coordinates:4:70198052..70207085(+)


>ENSBTAG00000005726
ATGGAGAGAGAAAAGGAACAATTCCGTAAACTCTTTATTGGTGGCTTGAGCTTTGAAACTACAGAAGAAAGTTTGAGGAA
CTACTACGAGCAATGGGGAAAACTTACAGATTGTGTGGTAATGAGGGATCCTGCAAGCAAAAGATCAAGAGGATTTGGTT
TTGTGACTTTTTCTTCCATGGCTGAAGTTGATGCTGCCATGGCTGCAAGACCTCATTCAATTGATGGGAGAGTGGTTGAG
CCAAAACGTGCTGTTGCAAGAGAGGAATCTGGAAAGCCGGGGGCTCATGTAACTGTGAAGAAGCTGTTTGTTGGTGGAAT
TAAGGAAGATACTGAGGAACATCATCTTAGAGATTACTTTGAGGAATATGGAAAAATTGATACCATTGAGATTATTACTG
ACAGGCAGTCTGGAAAGAAAAGAGGCTTTGGATTTGTTACTTTTGATGACCATGATCCTGTGGATAAGATTGTGTTGCAA
AAATACCATACTATCAATGGTCATAATGCAGAAGTAAGAAAGGCTTTGTCTAGACAAGAAATGCAGGAAGTCCAAAGTTC
TAGAAGTGGAAGAGGAGGCAACTTTGGTTTTGGAGATTCTCGTGGTGGCGGTGGAAATTTTGGACCAGGACCAGGAAGTA
ACTTTAGAGGAGGATCTGATGGATATGGAAGTGGCCGTGGATTTGGGGATGGCTATAATGGGTATGGAGGAGGACCTGGA
GGTGGCAATTTTGGAGGTAGCCCTGGTTATGGAGGAGGAAGAGGAGGATATGGTGGTGGAGGACCTGGATATGGCAACCA
GGGTGGGGGCTACGGAGGTGGTTATGACAACTATGGAGGAGGAAATTACGGGAGTGGAAATTACAATGATTTTGGAAATT
ATAACCAACAACCTTCTAACTATGGTCCAATGAAGAGTGGAAATTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGT
GGAGGAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGAGGGAGAAGCAGATACTGA

Library Parental gene expression (RPM)
SRP017611_brain 456 .29 RPM
SRP017611_kidney 497 .29 RPM
SRP017611_liver 221 .99 RPM
ERP005899_muscle 291 .24 RPM
ERP005899_liver 258 .18 RPM
SRP030211_testis 451 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001553 other_paralog 20 retrogenes
retro_btau_1019, retro_btau_1065, retro_btau_1268, retro_btau_1378, retro_btau_1379, retro_btau_1437, retro_btau_1455, retro_btau_1657, retro_btau_1673, retro_btau_283, retro_btau_337, retro_btau_403, retro_btau_462, retro_btau_516, retro_btau_519, retro_btau_589, retro_btau_602, retro_btau_677, retro_btau_715, retro_btau_822,
Bos taurus ENSBTAG00000014804 within_species_paralog 2 retrogenes
retro_btau_1827, retro_btau_461,
Bos taurus ENSBTAG00000021580 other_paralog 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Choloepus hoffmanni ENSCHOG00000013832 ortholog_one2one 15 retrogenes
retro_chof_1060, retro_chof_1191, retro_chof_1413, retro_chof_1460, retro_chof_1507, retro_chof_2062, retro_chof_2135, retro_chof_2235, retro_chof_2263, retro_chof_2404, retro_chof_2425, retro_chof_2473, retro_chof_2574, retro_chof_499, retro_chof_853,
Ciona intestinalis ENSCING00000004062 possible_ortholog 1 retrogene
retro_cint_7,
Ciona savignyi ENSCSAVG00000000472 possible_ortholog 1 retrogene
retro_csav_26,
Dasypus novemcinctus ENSDNOG00000012928 ortholog_one2one 1 retrogene
retro_dnov_1978,
Dipodomys ordii ENSDORG00000005482 ortholog_one2one 1 retrogene
retro_dord_489,
Echinops telfairi ENSETEG00000018577 ortholog_one2one 1 retrogene
retro_etel_1368,
Felis catus ENSFCAG00000027765 ortholog_one2one 1 retrogene
retro_fcat_692,
Macropus eugenii ENSMEUG00000001084 ortholog_one2one 2 retrogenes
retro_meug_1897, retro_meug_214,
Myotis lucifugus ENSMLUG00000007578 ortholog_one2one 1 retrogene
retro_mluc_34,
Mus musculus ENSMUSG00000004980 ortholog_one2one 1 retrogene
retro_mmus_573,
Oryctolagus cuniculus ENSOCUG00000026859 ortholog_one2one 2 retrogenes
retro_ocun_1205, retro_ocun_642,
Ochotona princeps ENSOPRG00000011698 ortholog_one2one 2 retrogenes
retro_opri_165, retro_opri_893,
Ictidomys tridecemlineatus ENSSTOG00000006202 ortholog_one2one 3 retrogenes
retro_itri_1723, retro_itri_448, retro_itri_717,
Tursiops truncatus ENSTTRG00000000709 ortholog_one2one 3 retrogenes
retro_ttru_1066, retro_ttru_1204, retro_ttru_1788,
Vicugna pacos ENSVPAG00000010417 ortholog_one2one 1 retrogene
retro_vpac_616,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_193 73.26 99.71
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2. retro_btau_228 68.82 99.71
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3. retro_btau_1330 98.98 57.77
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4. retro_btau_1535 75.28 77.42
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Download FASTA sequences of all ENSBTAG00000005726 retrocopies