Parental gene:

HNRNPA1, ENSBTAG00000001553

Aliases:HNRNPA1, HNRPA1, hnRNP A1
Description:Heterogeneous nuclear ribonucleoprotein A1 [Source:UniProtKB/Swiss-Prot;Acc:P09867]
Organism:Cow (Bos taurus)
Coordinates:5:25939736..25944246(-)


>ENSBTAG00000001553
ATGTCTAAATCAGAGTCTCCCAAAGAGCCCGAACAGCTGCGGAAGCTCTTCATCGGAGGATTGAGCTTTGAAACAACCGA
TGAGAGTCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAGGGATCCAAACACCAAGCGCT
CCAGAGGCTTCGGGTTTGTCACGTACGCCACGGTGGAGGAGGTGGATGCGGCCATGAATGCAAGGCCACACAAGGTGGAC
GGAAGAGTTGTGGAACCAAAGAGGGCCGTCTCAAGAGAAGATTCTCAAAGACCTGGTGCCCACTTAACTGTGAAAAAGAT
TTTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTGAGAGATTATTTTGAACAGTACGGGAAAATTGAAGTAA
TTGAAATCATGACTGACCGAGGCAGTGGCAAAAAGAGAGGCTTTGCTTTTGTAACCTTTGATGACCATGACTCCGTAGAC
AAGATTGTCATTCAGAAATACCACACTGTGAATGGCCACAACTGTGAAGTGAGAAAAGCCCTGTCTAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAGAGAGGTCGAAGTGGTTCTGGAAACTTTGGTGGCGGTCGTGGAGGTGGTTTTGGTGGGAATG
ACAACTTTGGTCGTGGAGGAAACTTCAGTGGTCGAGGTGGCTTTGGTGGCAGCCGTGGTGGTGGCGGATATGGTGGCAGT
GGGGATGGATATAATGGATTTGGTAATGACGGAAGCAATTTTGGAGGTGGCGGAAGCTACAATGATTTTGGCAATTACAA
CAATCAATCTTCAAATTTTGGACCCATGAAAGGAGGAAACTTTGGAGGCAGAAGTTCTGGCCCCTATGGTGGTGGAGGCC
AATACTTTGCCAAACCACGAAACCAAGGTGGCTATGGTGGCTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGGTTT
TAA

Library Parental gene expression (RPM)
SRP017611_brain 164 .49 RPM
SRP017611_kidney 249 .12 RPM
SRP017611_liver 85 .48 RPM
ERP005899_muscle 523 .83 RPM
ERP005899_liver 64 .89 RPM
SRP030211_testis 109 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005726 other_paralog 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Bos taurus ENSBTAG00000014804 other_paralog 2 retrogenes
retro_btau_1827, retro_btau_461,
Bos taurus ENSBTAG00000021580 within_species_paralog 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Cavia porcellus ENSCPOG00000020972 possible_ortholog 1 retrogene
retro_cpor_1078,
Equus caballus ENSECAG00000008676 ortholog_one2one 1 retrogene
retro_ecab_74,
Felis catus ENSFCAG00000010150 ortholog_one2one 9 retrogenes
retro_fcat_1574, retro_fcat_1742, retro_fcat_1867, retro_fcat_382, retro_fcat_474, retro_fcat_712, retro_fcat_781, retro_fcat_844, retro_fcat_888,
Homo sapiens ENSG00000135486 ortholog_one2one 57 retrogenes
retro_hsap_1021, retro_hsap_1042, retro_hsap_1082, retro_hsap_1240, retro_hsap_1276, retro_hsap_1282, retro_hsap_1287, retro_hsap_1481, retro_hsap_158, retro_hsap_1584, retro_hsap_1613, retro_hsap_1638, retro_hsap_1711, retro_hsap_1899, retro_hsap_1933, retro_hsap_2002, retro_hsap_2029, retro_hsap_2091, retro_hsap_2096, retro_hsap_2197, retro_hsap_2347, retro_hsap_2379, retro_hsap_2636, retro_hsap_2640, retro_hsap_2668, retro_hsap_2718, retro_hsap_2857, retro_hsap_291, retro_hsap_2917, retro_hsap_2944, retro_hsap_3049, retro_hsap_3055, retro_hsap_332, retro_hsap_3343, retro_hsap_3393, retro_hsap_3432, retro_hsap_3439, retro_hsap_3449, retro_hsap_3549, retro_hsap_3745, retro_hsap_3756, retro_hsap_3757, retro_hsap_394, retro_hsap_3979, retro_hsap_4011, retro_hsap_4084, retro_hsap_414, retro_hsap_4218, retro_hsap_4282, retro_hsap_437, retro_hsap_4747, retro_hsap_482, retro_hsap_4883, retro_hsap_668, retro_hsap_84, retro_hsap_845, retro_hsap_924,
Gorilla gorilla ENSGGOG00000003040 ortholog_one2one 6 retrogenes
retro_ggor_1006, retro_ggor_1010, retro_ggor_1221, retro_ggor_1738, retro_ggor_2041, retro_ggor_950,
Mustela putorius furo ENSMPUG00000004620 possible_ortholog 1 retrogene
retro_mputfur_34,
Mustela putorius furo ENSMPUG00000005735 possible_ortholog 2 retrogenes
retro_mputfur_1378, retro_mputfur_653,
Mus musculus ENSMUSG00000046434 ortholog_one2one 3 retrogenes
retro_mmus_1861, retro_mmus_410, retro_mmus_543,
Nomascus leucogenys ENSNLEG00000017659 ortholog_one2one 34 retrogenes
retro_nleu_1011, retro_nleu_1090, retro_nleu_1257, retro_nleu_130, retro_nleu_132, retro_nleu_1497, retro_nleu_1630, retro_nleu_1648, retro_nleu_166, retro_nleu_167, retro_nleu_1695, retro_nleu_1739, retro_nleu_1774, retro_nleu_1802, retro_nleu_1875, retro_nleu_190, retro_nleu_2040, retro_nleu_2222, retro_nleu_2304, retro_nleu_2324, retro_nleu_2378, retro_nleu_2690, retro_nleu_2742, retro_nleu_2852, retro_nleu_32, retro_nleu_366, retro_nleu_458, retro_nleu_587, retro_nleu_601, retro_nleu_645, retro_nleu_648, retro_nleu_708, retro_nleu_825, retro_nleu_987,
Oryctolagus cuniculus ENSOCUG00000013350 possible_ortholog 1 retrogene
retro_ocun_1675,
Oreochromis niloticus ENSONIG00000012248 ortholog_one2many 1 retrogene
retro_onil_38,
Ochotona princeps ENSOPRG00000006107 ortholog_one2one 10 retrogenes
retro_opri_1183, retro_opri_338, retro_opri_349, retro_opri_424, retro_opri_456, retro_opri_597, retro_opri_753, retro_opri_782, retro_opri_79, retro_opri_843,
Pteropus vampyrus ENSPVAG00000000322 ortholog_one2one 9 retrogenes
retro_pvam_1133, retro_pvam_1230, retro_pvam_1313, retro_pvam_1370, retro_pvam_196, retro_pvam_300, retro_pvam_453, retro_pvam_643, retro_pvam_859,
Rattus norvegicus ENSRNOG00000036839 ortholog_one2one 17 retrogenes
retro_rnor_1001, retro_rnor_1322, retro_rnor_1658, retro_rnor_1770, retro_rnor_1786, retro_rnor_1846, retro_rnor_1987, retro_rnor_2194, retro_rnor_2482, retro_rnor_2551, retro_rnor_2619, retro_rnor_2657, retro_rnor_2881, retro_rnor_2944, retro_rnor_2945, retro_rnor_2965, retro_rnor_2969,
Tupaia belangeri ENSTBEG00000008238 ortholog_one2one 30 retrogenes
retro_tbel_1219, retro_tbel_156, retro_tbel_162, retro_tbel_1643, retro_tbel_1830, retro_tbel_1967, retro_tbel_2192, retro_tbel_2195, retro_tbel_2211, retro_tbel_2330, retro_tbel_261, retro_tbel_2666, retro_tbel_2673, retro_tbel_2703, retro_tbel_276, retro_tbel_2774, retro_tbel_2787, retro_tbel_2970, retro_tbel_3473, retro_tbel_3976, retro_tbel_3995, retro_tbel_4266, retro_tbel_4271, retro_tbel_453, retro_tbel_4653, retro_tbel_4729, retro_tbel_692, retro_tbel_70, retro_tbel_79, retro_tbel_839,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_283 74.92 93.44
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2. retro_btau_337 89.67 66.56
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3. retro_btau_403 78.61 57.81
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4. retro_btau_462 92.21 100.00
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5. retro_btau_516 73.31 86.56
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6. retro_btau_519 96.56 100.00
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7. retro_btau_589 85.08 55.94
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8. retro_btau_602 95.02 100.00
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9. retro_btau_677 75.16 99.69
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10. retro_btau_715 80.98 57.19
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11. retro_btau_822 93.12 100.00
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12. retro_btau_1019 95.64 100.00
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13. retro_btau_1065 97.20 100.00
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14. retro_btau_1268 97.50 100.00
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15. retro_btau_1378 81.23 79.69
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16. retro_btau_1379 95.41 88.44
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17. retro_btau_1437 69.01 52.50
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18. retro_btau_1455 84.74 100.00
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19. retro_btau_1657 78.20 90.00
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20. retro_btau_1673 91.61 100.00
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Download FASTA sequences of all ENSBTAG00000001553 retrocopies