Parental gene:

BT.94621, ENSBTAG00000021580

Aliases:HNRNPA3, HNRPA3
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:RefSeq peptide;Acc:NP_001192358]
Organism:Cow (Bos taurus)
Coordinates:2:19700522..19705981(-)


>ENSBTAG00000021580
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGCCGCCGCCGGGGTGCACAGGGTCATGA
TCCCAAGGAACCAGAGCAGTTGAGAAAGCTGTTTATTGGTGGTCTGAGCTTTGAAACTACAGATGATAGCTTAAGAGAAC
ATTTTGAGAAATGGGGCACACTTACAGATTGTGTGGTGATGAGAGACCCCCAAACAAAACGTTCCAGGGGCTTTGGTTTT
GTGACTTATTCTTGTGTTGAAGAAGTGGATGCAGCGATGTGTGCTCGACCGCACAAGGTTGATGGGCGAGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTAAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAATTTGAGAGACTACTTTGAAAAGTATGGCAAGATTGAAACCATAGAAGTTATGGAAGAC
AGGCAGAGTGGGAAAAAGAGAGGATTTGCTTTTGTAACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATACCACACTATTAATGGGCATAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAATCTGCTGGATCACAAA
GAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGTCGTGGAGGAAACTTTGGAGGTGGTGGAGGAAACTTTGGCCGTGGT
GGAAACTTTGGTGGAAGAGGAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGGAGCTATGGAGGAGGCGATGGTGGATA
TAATGGATTTGGAGGGGATGGTGGCAACTATGGCGGTGGTCCTGGTTATAGTAGTAGAGGAGGTTACGGTGGTGGTGGAC
CAGGAGGATATGGAAACCAAGGTGGTGGATATGGTGGTGGTGGTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTT
GGAGGTGGTAACTATGGTGGTGGTGGAAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAGTCAAATTATGGACC
CATGAAAGGGGGTAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTG
GATATGGTAGCAGAAGGTTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 85 .83 RPM
SRP017611_kidney 139 .41 RPM
SRP017611_liver 61 .16 RPM
ERP005899_muscle 150 .66 RPM
ERP005899_liver 25 .74 RPM
SRP030211_testis 187 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001553 within_species_paralog 20 retrogenes
retro_btau_1019, retro_btau_1065, retro_btau_1268, retro_btau_1378, retro_btau_1379, retro_btau_1437, retro_btau_1455, retro_btau_1657, retro_btau_1673, retro_btau_283, retro_btau_337, retro_btau_403, retro_btau_462, retro_btau_516, retro_btau_519, retro_btau_589, retro_btau_602, retro_btau_677, retro_btau_715, retro_btau_822,
Bos taurus ENSBTAG00000005726 other_paralog 4 retrogenes
retro_btau_1330, retro_btau_1535, retro_btau_193, retro_btau_228,
Bos taurus ENSBTAG00000014804 other_paralog 2 retrogenes
retro_btau_1827, retro_btau_461,
Dasypus novemcinctus ENSDNOG00000019022 ortholog_one2one 3 retrogenes
retro_dnov_540, retro_dnov_711, retro_dnov_959,
Ficedula albicollis ENSFALG00000003215 ortholog_one2many 1 retrogene
retro_falb_15,
Felis catus ENSFCAG00000012146 ortholog_one2one 5 retrogenes
retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Homo sapiens ENSG00000170144 ortholog_one2one 11 retrogenes
retro_hsap_1117, retro_hsap_1274, retro_hsap_1572, retro_hsap_209, retro_hsap_2194, retro_hsap_2664, retro_hsap_2951, retro_hsap_34, retro_hsap_4764, retro_hsap_665, retro_hsap_862,
Gallus gallus ENSGALG00000009250 ortholog_one2many 1 retrogene
retro_ggal_10,
Gorilla gorilla ENSGGOG00000006130 ortholog_one2one 6 retrogenes
retro_ggor_1001, retro_ggor_1197, retro_ggor_14, retro_ggor_1736, retro_ggor_576, retro_ggor_702,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Macaca mulatta ENSMMUG00000001858 ortholog_one2one 4 retrogenes
retro_mmul_1945, retro_mmul_2442, retro_mmul_386, retro_mmul_801,
Mus musculus ENSMUSG00000059005 ortholog_one2many 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2many 1 retrogene
retro_psin_16,
Sarcophilus harrisii ENSSHAG00000018255 possible_ortholog 1 retrogene
retro_shar_518,
Ictidomys tridecemlineatus ENSSTOG00000025125 ortholog_one2one 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2many 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2many 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_90 96.49 82.37
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2. retro_btau_212 53.62 78.42
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3. retro_btau_277 83.18 55.79
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4. retro_btau_370 60.52 70.79
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5. retro_btau_811 89.40 56.58
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6. retro_btau_1029 92.37 96.32
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7. retro_btau_1310 91.60 100.00
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8. retro_btau_1587 88.74 100.00
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Download FASTA sequences of all ENSBTAG00000021580 retrocopies