RetrogeneDB ID:

retro_ttru_431

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2257:353132..353617(+)
Located in intron of:ENSTTRG00000000874
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MRPL11
Ensembl ID:ENSTTRG00000002678
Aliases:None
Description:mitochondrial ribosomal protein L11 [Source:HGNC Symbol;Acc:14042]


Retrocopy-Parental alignment summary:






>retro_ttru_431
CCCGGGCCCCCGCCAGGCCCCGTCCTGGGTCAGCAAGGCATTTCTGTCAACCAGTTCTGTAAGGAGTTCAACGAGAAGAC
CAAGGACATCAAAGAAGGCGTTTCTCTGCCTACCAAGATTTTTGTGAAGCCTGACAGGGCATTTGAAATCAAAACTGGCC
AACCCACTGTTTCCTACTTCCTGAAGGCAGCTTCTGGGATTGAGAAGGGGGCCCCACACACAGAGAAAGAAGTGGCAGGC
CTGGTGCCACTGAAGCACGTGTAGGAGATCGCCGGCGTCAAAGCTCAGGATAACACCTTTGCCCTGCAGGACGTGCCCCA
TCCTCTGTTGTCCACTCCGTCATTGGATCTGCCGGTTCCCTGGGCATTTATGTGGTGAAGGACCTCCGTTCTGAAGAGCT
GGCAGCTTTCCAGAAGGAGCGAGCCCTGTTCCTGGCTGCTCAGAAAGAGGCAGATTTGGCAGCCCAGGCAGAAGCTGTCA
AGAAG

ORF - retro_ttru_431 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.66 %
Parental protein coverage: 84.38 %
Number of stop codons detected: 1
Number of frameshifts detected: 1


Retrocopy - Parental Gene Alignment:

ParentalPGPPLGPVLGQRGVSINQFCKEFNEKTKDIKEGIPLPTKIFVKPDRTFEIKIGQPTVSYFLKAAAGIEKG
PGPP.GPVLGQ.G.S.NQFCKEFNEKTKDIKEG..LPTKIFVKPDR.FEIK.GQPTVSYFLKAA.GIEKG
RetrocopyPGPPPGPVLGQQGISVNQFCKEFNEKTKDIKEGVSLPTKIFVKPDRAFEIKTGQPTVSYFLKAASGIEKG
ParentalARHTGKEVAGLVTLKHVYEIARVKAQDDAFALQDVP-LSSVVRSIIGSARSLGIRVVKDLSSEELAAFQK
A.HT.KEVAGLV.LKHV.EIA.VKAQD..FALQDVP..SSVV.S.IGSA.SLGI.VVKDL.SEELAAFQK
RetrocopyAPHTEKEVAGLVPLKHV*EIAGVKAQDNTFALQDVP<PSSVVHSVIGSAGSLGIYVVKDLRSEELAAFQK
ParentalERALFLAAQREADLAAQAEAAKK
ERALFLAAQ.EADLAAQAEA.KK
RetrocopyERALFLAAQKEADLAAQAEAVKK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_431 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_431 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 15 parental genes, and 18 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000127061 retrocopy
retro_cfam_761,
Callithrix jacchus ENSCJAG000000014701 retrocopy
retro_cjac_803,
Dasypus novemcinctus ENSDNOG000000041112 retrocopies
retro_dnov_1607, retro_dnov_566,
Echinops telfairi ENSETEG000000152162 retrocopies
retro_etel_1754, retro_etel_333,
Homo sapiens ENSG000001745471 retrocopy
retro_hsap_3390,
Gorilla gorilla ENSGGOG000000013001 retrocopy
retro_ggor_2296,
Myotis lucifugus ENSMLUG000000040471 retrocopy
retro_mluc_2131,
Mus musculus ENSMUSG000000249021 retrocopy
retro_mmus_2118,
Nomascus leucogenys ENSNLEG000000061111 retrocopy
retro_nleu_1705,
Otolemur garnettii ENSOGAG000000104482 retrocopies
retro_ogar_1143, retro_ogar_3159,
Pongo abelii ENSPPYG000000030251 retrocopy
retro_pabe_2786,
Pan troglodytes ENSPTRG000000039241 retrocopy
retro_ptro_2305,
Ictidomys tridecemlineatus ENSSTOG000000259711 retrocopy
retro_itri_941,
Tarsius syrichta ENSTSYG000000087121 retrocopy
retro_tsyr_1095,
Tursiops truncatus ENSTTRG00000002678 1 retrocopy
retro_ttru_431 ,


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