RetrogeneDB ID: retro_ttru_1725

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_88616:44987..46045(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANXA2
• Ensembl ID: ENSTTRG00000007705
• Aliases: None
• Description: annexin A2 [Source:HGNC Symbol;Acc:537]

Sequence

>retro_ttru_1725
AGACACTCGCAGTGCACTGCACCCGGCCCAACTTCTCTCAAAATGTCTACCGTTCATGAAATTCTCTGCAAGCTCAGCTT
GGAGGGTGATCACTCCACACCTCCAAGTGCATATGGGTCAGTCAAAGTGTACACCAACTTTGATGCTGAGCGGGACGCTC
TGAACATTGAAACGGCCATCAAGACTAAAAGTGTGGATGAGGTCACCATCGTTAACACTTTGACCAACCGCAGCAATGAA
CAGAGACAGAATATTGCCTTCGCCTACCAGAGAAGGACCAAAAAGGAACTTGCATAAGTACTGAAGGCAGCCTCGTCCAG
CCACCTGGAGACAGTGATTTTGGGCCTATTGAAAACACCTGCTCAGTATGACGCTTCCGATCTGAAAGCCTCCATGAAGG
GGTTGGGGACCGATGAGGACTCCCTCATTGAGATCATCTGCTCAAGGACCAGCCAGGAGCTACAGGAAATCAACAGAGTC
TACAAGGAAACGTACAAGACCGATCTGGAGAAGGATACCATTTCCAACACATCTGGTGACTTCCGCAAGCTGATGATTGC
CCTCGCGAAGGGTCAAAGGGCAGAGGATGGCTATGTCATTGATTATGAACTGATTGACCAAGATGCCTGGGATCTCTATG
ATGCTGGCATGAAGAGGAGAGGAACTAATGTTCCCAAGTGGGTCAGCGTCATGACCGAGTGGAGCGTGTGCCACCTCCAG
AAAGTATTTGAAAGGTACAAGAGCTACAGCCCTTATGACATGCTGGAGAGCATGAAGAAGGAGGTCAGAGGAGACCCGGA
AAATGCCTTCCTGAACCGAGTCCAGTGCATTCAGACCAAGCCCTGTATTTTGCTGACAGACTGTACAACTCCATGAAGGG
CAAGGGCACTCACGATAAGGTCCTGATTAGAATCATGATCTCCCACAGTGAAGTGGACATGTTGAAAATTAGATCTGAAT
TCAAGAAAAAGTATGACAAGTCCCTGTACTATTACATTCAGCAAGACACCAAAGGCGACTACCAGAAAGCGCTGCTGTAC
CTGTGTGGTAGGGATGAC

Alignment

ORF - retro_ttru_1725 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.64 %
• Parental protein coverage: 99.15 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  RLAGCGERGKESFKMSTVHEILCKLSLEGDHSTPPSAYGSVKAYTNFDAERDALNIETAIKTKGVDEVTI
          R...C...G..S.KMSTVHEILCKLSLEGDHSTPPSAYGSVK.YTNFDAERDALNIETAIKTK.VDEVTI
Retrocopy RHSQCTAPGPTSLKMSTVHEILCKLSLEGDHSTPPSAYGSVKVYTNFDAERDALNIETAIKTKSVDEVTI

Parental  VNILTNRSNAQRQDIAFAYQRRTKKELASALKSALFGHLETVILGLLKTPAQYDASELKASMKGLGTDED
          VN.LTNRSN.QRQ.IAFAYQRRTKKELA..LK.A...HLETVILGLLKTPAQYDAS.LKASMKGLGTDED
Retrocopy VNTLTNRSNEQRQNIAFAYQRRTKKELA*VLKAASSSHLETVILGLLKTPAQYDASDLKASMKGLGTDED

Parental  SLIEIICSRTNQELQEINRVYKEMYKTDLEKDIVSDTSGDFRKLMVALSKGRRAEDGSVIDYELIDQDAR
          SLIEIICSRT.QELQEINRVYKE.YKTDLEKD..S.TSGDFRKLM.AL.KG.RAEDG.VIDYELIDQDA.
Retrocopy SLIEIICSRTSQELQEINRVYKETYKTDLEKDTISNTSGDFRKLMIALAKGQRAEDGYVIDYELIDQDAW

Parental  ELYDAGVKRKGTDVPKWISIMTERSVCHLQKXXXXXXXXXXXXXLESIKMEVKGDLENAFLNLVQCIQNK
          .LYDAG.KR.GT.VPKW.S.MTE.SVCHLQK.............LES.K.EV.GD.ENAFLN.VQCIQ.K
Retrocopy DLYDAGMKRRGTNVPKWVSVMTEWSVCHLQKVFERYKSYSPYDMLESMKKEVRGDPENAFLNRVQCIQTK

Parental  P-LYFADRLYDSMKGKGTRDKV-IRIMISRSEVDMLKIRCEFKKKYGKSLYYYIQQDTKGDYQKALLYLC
          P.LYFADRLY.SMKGKGT.DKV.IRIMIS.SEVDMLKIR.EFKKKY.KSLYYYIQQDTKGDYQKALLYLC
Retrocopy P<LYFADRLYNSMKGKGTHDKVLIRIMISHSEVDMLKIRSEFKKKYDKSLYYYIQQDTKGDYQKALLYLC

Parental  GGDD
          G.DD
Retrocopy GRDD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1725 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1725 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008055	2 retrocopies	retro_amel_1531, retro_amel_1836,
Bos taurus	ENSBTAG00000009615	2 retrocopies	retro_btau_634, retro_btau_985,
Canis familiaris	ENSCAFG00000016686	3 retrocopies	retro_cfam_1631, retro_cfam_367, retro_cfam_707,
Equus caballus	ENSECAG00000012670	1 retrocopy	retro_ecab_759,
Felis catus	ENSFCAG00000007862	2 retrocopies	retro_fcat_594, retro_fcat_709,
Macropus eugenii	ENSMEUG00000008980	3 retrocopies	retro_meug_1000, retro_meug_312, retro_meug_389,
Monodelphis domestica	ENSMODG00000011604	1 retrocopy	retro_mdom_1471,
Mustela putorius furo	ENSMPUG00000000762	2 retrocopies	retro_mputfur_73, retro_mputfur_79,
Pan troglodytes	ENSPTRG00000007132	2 retrocopies	retro_ptro_2106, retro_ptro_81,
Tursiops truncatus	ENSTTRG00000007705	1 retrocopy	retro_ttru_1725 ,