RetrogeneDB ID:

retro_ttru_1687

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_85739:28952..30202(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000003794
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1687
GAACCCTTTGTCCCTGACGTGGTGAATGAGGTGCAGGTGAAGGCAGACAGACCGAACCCCTGGATGTTCAGGAATCACTC
AGGTGACACAAAAGAGGCTGAGGTCCAGGGGGACCCTGAAGAACTTGCAGAGCCTGCAGCCCGGAGGCTCCTGAAAGTGA
GGAAGAAGGACCAGTGGTGGCGGAAGAAATTCTGTTGAAAGAATTTGAGGAAAGGCGATCACTTTGACAAAAGTCTGGGC
TCAACCAGATCGCCAAGCCGGTGGGCAGTCAAGAAGCAAAAGATCTTAGCAGCCAGGAGGTGCTGTCTGAATTGAGGGCA
CTGACTCAGAAACTCAACAGGGAGAGCCATCAGTCCAGGAAGCAAGAACTGAGTTCAACGAGGACAGTTCTGGCGGTCCA
GAGAGAGGAACCTGCCGGGGAGGAAGAGGAGCCTCTGTTGCTGCAGAGGCCGGAGAGAGCACGAGCTCTGGAGGAACTGG
AGGAACTGGGCAAAGAAGGATGTTTTCAAAACAAGGAGCTTCCCAGAGCTGCGGTAGAAGGGCAGCAGTTGGAGAGGAAC
CCAAGTAATCATCTTGGTGTCCCCAAGGAGAAGAAAAGGAAGGAGCAAATGATTGATCTCCAGAACCTCCTGACCACAAA
ATCTCCTTCCATGAAGTCCTTGGCAGTTCCCACGACAGTAGAGGAGTTGGAAGATGAAGAGAGAGATCAAAGGCAGATGA
TAAAGGAAGCTTTTGCTGGGAATGATGTCATCAGAGACTTCTTGAAAGAGAAGAGGGAAGCTGTGGAGGCGAGTAAGCCG
AAGGATGTGGACCTGACTCCGCCTGGCTGGGGCGAGTGGGGTGGTGTGGGCCTGAAGCCCAGTGCAAAGAAGAGACGCCG
GTTTCTCATTAAAGCCCCTGAGGGTCCTCCAAGGAAAGACAAGAATTTGCCAAATGTGATTCTCAATGAGAAGCGCAACA
TCCATGCAGTGGCTCATCAGGTGCGGATGCTTCCATATCCATTCACACACCATCAGCAATTTGAAAGGACCATTCAGACC
CCTATAGGATCTACATGGAACCCCCAGAGGTCCTTCCAAAAGCTGACTATGCCCAAGGTTGCCACCAAGCCGGGCCATAT
CATTAAGCCTATAAAAGCAGAGGATGTGGGCTGCCGGTCTTCCTCAAGGTCGGACCTCTCTGTCGTACAGAGAAATCCAA
AATGACTCTCCATACGTCACAAAAAACAGCTGAAGAAAAACTCTGTAGAT

ORF - retro_ttru_1687 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.74 %
Parental protein coverage: 54.8 %
Number of stop codons detected: 2
Number of frameshifts detected: 1


Retrocopy - Parental Gene Alignment:

ParentalEPFVPDVVNEVQVKADRPNPWMFRNHSGDTKEAEVQGDPEELAEPAAQ-EAPESEEEGPVVAEEILLKEF
EPFVPDVVNEVQVKADRPNPWMFRNHSGDTKEAEVQGDPEELAEPAA..EAPESEEEGPVVAEEILLKEF
RetrocopyEPFVPDVVNEVQVKADRPNPWMFRNHSGDTKEAEVQGDPEELAEPAAR<EAPESEEEGPVVAEEILLKEF
ParentalEERRSLRQKSGLNQIAKPVGSQEAKDLSSQEVLSELRALSQKLNRESHQSRKQELSSTRTVLAVQREEPA
EERRSL.QKSGLNQIAKPVGSQEAKDLSSQEVLSELRAL.QKLNRESHQSRKQELSSTRTVLAVQREEPA
RetrocopyEERRSL*QKSGLNQIAKPVGSQEAKDLSSQEVLSELRALTQKLNRESHQSRKQELSSTRTVLAVQREEPA
ParentalGEEEEPLLLQRPERARTLDELEELGKEGCFQNKELPRVVVEGQQLERNPSNHLGVPKEKKRKEQMIDLQN
GEEEEPLLLQRPERAR.........KEGCFQNKELPR..VEGQQLERNPSNHLGVPKEKKRKEQMIDLQN
RetrocopyGEEEEPLLLQRPERARAXXXXXXXXKEGCFQNKELPRAAVEGQQLERNPSNHLGVPKEKKRKEQMIDLQN
ParentalLLTTKSPSMKSLAVPTTVEELEDEERDQRQMIKEAFAGDDVIRDFLKEKREAVEASKPKDVDLTLPGWGE
LLTTKSPSMKSLAVPTTVEELEDEERDQRQMIKEAFAG.DVIRDFLKEKREAVEASKPKDVDLT.PGWGE
RetrocopyLLTTKSPSMKSLAVPTTVEELEDEERDQRQMIKEAFAGNDVIRDFLKEKREAVEASKPKDVDLTPPGWGE
ParentalWGGVGLKPSAKKRRRFLVKAPEGPPRKDKNLPNVILNEKRNIHAVAHQVRMLPYPFTHHQQFERTIQTPI
WGGVGLKPSAKKRRRFL.KAPEGPPRKDKNLPNVILNEKRNIHAVAHQVRMLPYPFTHHQQFERTIQTPI
RetrocopyWGGVGLKPSAKKRRRFLIKAPEGPPRKDKNLPNVILNEKRNIHAVAHQVRMLPYPFTHHQQFERTIQTPI
ParentalGSTWNTQRSFQKLTMPKVVTKPGHIIKPIKAEDVGYRSSSRSDLSVVQRNPKRLSIRHKKQLKKNSVD
GSTWN.QRSFQKLTMPKV.TKPGHIIKPIKAEDVG.RSSSRSDLSVVQRNPK.LSIRHKKQLKKNSVD
RetrocopyGSTWNPQRSFQKLTMPKVATKPGHIIKPIKAEDVGCRSSSRSDLSVVQRNPK*LSIRHKKQLKKNSVD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tursiops truncatus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_ttru_1687 retrocopy.

TSS - click to see more details

Tursiops truncatus was not studied using FANTOM5 data.

Lab - click to see more details

retro_ttru_1687 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 14 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000136712 retrocopies
retro_btau_133, retro_btau_1706,
Cavia porcellus ENSCPOG000000142312 retrocopies
retro_cpor_1272, retro_cpor_242,
Dasypus novemcinctus ENSDNOG000000021801 retrocopy
retro_dnov_1479,
Homo sapiens ENSG000001566971 retrocopy
retro_hsap_29,
Gorilla gorilla ENSGGOG000000149301 retrocopy
retro_ggor_163,
Loxodonta africana ENSLAFG000000166531 retrocopy
retro_lafr_110,
Myotis lucifugus ENSMLUG000000019842 retrocopies
retro_mluc_1643, retro_mluc_308,
Macaca mulatta ENSMMUG000000207001 retrocopy
retro_mmul_35,
Mus musculus ENSMUSG000000637851 retrocopy
retro_mmus_261,
Nomascus leucogenys ENSNLEG000000152581 retrocopy
retro_nleu_2091,
Procavia capensis ENSPCAG000000060701 retrocopy
retro_pcap_127,
Pan troglodytes ENSPTRG000000222621 retrocopy
retro_ptro_824,
Tarsius syrichta ENSTSYG000000094151 retrocopy
retro_tsyr_2104,
Tursiops truncatus ENSTTRG00000003794 1 retrocopy
retro_ttru_1687 ,


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