RetrogeneDB ID:

retro_tsyr_434

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_116566:187..481(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF7
Ensembl ID:ENSTSYG00000007778
Aliases:None
Description:ring finger protein 7 [Source:HGNC Symbol;Acc:10070]


Retrocopy-Parental alignment summary:






>retro_tsyr_434
TCTCACTCCAGGGGCGCAGGCTCCAAGTTAGGAGGCGACAAAGTGTCTTCTCTCAAGAAGTGGAACGTGGTAGTCACGGG
GAGCTGGGACGTGGAGTGCGATTCACGCGCTACCTGCAGGGTCTGGGTGACGGATGCCTGTCTGAGATGTCAAGCTGAAC
ACAAACAAGAGGATCGTGTTATGGTCTGGGGAGAATGTAATCATTCCTTCCACAACTGCTGCATGTCCCTGGGGGTGAAG
CAGAACCATCACTGCCCTCTCTGCCAGCAGGACTGGGTGGCCCAAAGAATCGGC

ORF - retro_tsyr_434 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.59 %
Parental protein coverage: 86.73 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalSHSGGAGSKSGGDKMFSLKKWNAVAMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF
SHS.GAGSK.GGDK..SLKKWN.V...SWDVECD..A.CRV.V.DACLRCQAE.KQED.V.VWGECNHSF
RetrocopySHSRGAGSKLGGDKVSSLKKWNVVVTGSWDVECDSRATCRVWVTDACLRCQAEHKQEDRVMVWGECNHSF
ParentalHNCCMSLWVKQNNRCPLCQQDWVVQRIG
HNCCMSL.VKQN..CPLCQQDWV.QRIG
RetrocopyHNCCMSLGVKQNHHCPLCQQDWVAQRIG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tarsius syrichta was not studied using ChIP-Seq data.

EST - click to see more details

Tarsius syrichta was not studied using EST data.

TSS - click to see more details

Tarsius syrichta was not studied using FANTOM5 data.

Lab - click to see more details

retro_tsyr_434 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 18 parental genes, and 40 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000076941 retrocopy
retro_cfam_1802,
Choloepus hoffmanni ENSCHOG000000107423 retrocopies
retro_chof_2513, retro_chof_45, retro_chof_518,
Callithrix jacchus ENSCJAG000000019912 retrocopies
retro_cjac_1391, retro_cjac_3943,
Dasypus novemcinctus ENSDNOG000000059613 retrocopies
retro_dnov_1587, retro_dnov_2383, retro_dnov_294,
Homo sapiens ENSG000001141251 retrocopy
retro_hsap_2790,
Gorilla gorilla ENSGGOG000000018291 retrocopy
retro_ggor_1942,
Microcebus murinus ENSMICG000000013531 retrocopy
retro_mmur_1140,
Macaca mulatta ENSMMUG000000066482 retrocopies
retro_mmul_1223, retro_mmul_1440,
Monodelphis domestica ENSMODG000000212321 retrocopy
retro_mdom_201,
Mus musculus ENSMUSG000000512343 retrocopies
retro_mmus_1066, retro_mmus_2450, retro_mmus_3,
Nomascus leucogenys ENSNLEG000000046463 retrocopies
retro_nleu_2038, retro_nleu_2972, retro_nleu_687,
Otolemur garnettii ENSOGAG000000086591 retrocopy
retro_ogar_2433,
Pongo abelii ENSPPYG000000141672 retrocopies
retro_pabe_1446, retro_pabe_2228,
Pan troglodytes ENSPTRG000000392481 retrocopy
retro_ptro_51,
Rattus norvegicus ENSRNOG000000116635 retrocopies
retro_rnor_1858, retro_rnor_1859, retro_rnor_2262, retro_rnor_517, retro_rnor_624,
Ictidomys tridecemlineatus ENSSTOG000000149643 retrocopies
retro_itri_1245, retro_itri_566, retro_itri_567,
Tupaia belangeri ENSTBEG000000029172 retrocopies
retro_tbel_2202, retro_tbel_4027,
Tarsius syrichta ENSTSYG00000007778 5 retrocopies
retro_tsyr_1222, retro_tsyr_1285, retro_tsyr_1410, retro_tsyr_2117, retro_tsyr_434 ,


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