RetrogeneDB ID: retro_sara_405

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_195010:5663..6566(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BTBD10
• Ensembl ID: ENSSARG00000000266
• Aliases: None
• Description: BTB (POZ) domain containing 10 [Source:HGNC Symbol;Acc:21445]

Sequence

>retro_sara_405
ACTCCCTCACGTGTTGCTAAAGGAGCTGTTAACCACACCAAAATGAGTCTACATGGTGCGTGTGGGGGACACGAACGATC
AAGAGATAGACGAAGATCAAGTGAGCGATCTCAGGATTCATCACATGAAAGAACAGAATCTCAACTAACTCCTTGCATTA
GAAATGTTACTTCTCCAACACGACAGCATCATATTGAACGAGAAAAAGATCATAGTTCTTCCCGCCCAAGTAGTCCTCGT
CCTCAAAAAGCGTCTCCAAATGGTTCCAGTAGCAGTGCCGGGAACAGTAGCAGAAATAGTAGTCAGTCAAGTTCCGATGG
TAGCTGTAAAACTTCTGGGGAGATGGTATTTGTATATGAAAATGCAAAAGAAGGTGCTCGTAATTTAAGAACATCAGAAC
GAGTGACGCTAATAGTGGATAACACTAGATTTGTTGTAGACCCATCCATTTTTACTGCACAGCCAAATACAATGTTGGGC
AGGATGTTTGGATCTGGTAGAGAACATAACTTTACACGACCCAATGAGAAAGGAGAGTATGAGGTGGCAGAGGGAATTGG
CTCCACTGTATTCCGAGCTATTTTGGATTACTATAAAACAGGAATAATCCATTGTCCTGATGGCATATCAATTCCTGAGC
TGAGAGAAGCATGTGACTACCTTTGTATCTCTTTTGAATATAGTACTATTAAATGTAGAGATCTCAGTGCTCTAATGCAT
GAGTTATCAAATGATGGTGCTCATAGACAGTTTGAATTTTACCTTGAAGAAATGATCTTACCACTTATGGTAGCTAGTGC
CCAGAGTGGGGAACGAGAATGCCACATAGTGGTGCTTACAGATGATGATGTGGTTGATTGGGATGAAGAGTATCCACCAC
AGATGGGAGAAGAGTATTCACAA

Alignment

ORF - retro_sara_405 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.34 %
• Parental protein coverage: 63.37 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TPSRVAKGAVDHTKMSLHGACGGHERSRDRRRSSDRSRDSSHERTESQLTPCIRNVTSPTRQHHIEREKD
          TPSRVAKGAV.HTKMSLHGACGGHERSRDRRRSS.RS.DSSHERTESQLTPCIRNVTSPTRQHHIEREKD
Retrocopy TPSRVAKGAVNHTKMSLHGACGGHERSRDRRRSSERSQDSSHERTESQLTPCIRNVTSPTRQHHIEREKD

Parental  HSSSRPSSPRPQKASPNGSSSSAGNSSRNSSQSSSDGSCKTSGEMVFVYENAKEGARNLRTSERVTLIVD
          HSSSRPSSPRPQKASPNGSSSSAGNSSRNSSQSSSDGSCKTSGEMVFVYENAKEGARNLRTSERVTLIVD
Retrocopy HSSSRPSSPRPQKASPNGSSSSAGNSSRNSSQSSSDGSCKTSGEMVFVYENAKEGARNLRTSERVTLIVD

Parental  NTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIRCPDGIS
          NTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKGEYEVAEGIGSTVFRAILDYYKTGII.CPDGIS
Retrocopy NTRFVVDPSIFTAQPNTMLGRMFGSGREHNFTRPNEKGEYEVAEGIGSTVFRAILDYYKTGIIHCPDGIS

Parental  IPELREACDYLCISFEYSTIKCRDLSALMHELSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLT
          IPELREACDYLCISFEYSTIKCRDLSALMHELSNDGA.RQFEFYLEEMILPLMVASAQSGERECHIVVLT
Retrocopy IPELREACDYLCISFEYSTIKCRDLSALMHELSNDGAHRQFEFYLEEMILPLMVASAQSGERECHIVVLT

Parental  DDDVVDWDEEYPPQMGEEYSQ
          DDDVVDWDEEYPPQMGEEYSQ
Retrocopy DDDVVDWDEEYPPQMGEEYSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_405 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000024984	1 retrocopy	retro_cpor_137,
Monodelphis domestica	ENSMODG00000008728	1 retrocopy	retro_mdom_1020,
Mus musculus	ENSMUSG00000038187	1 retrocopy	retro_mmus_3560,
Nomascus leucogenys	ENSNLEG00000017691	1 retrocopy	retro_nleu_232,
Otolemur garnettii	ENSOGAG00000000739	1 retrocopy	retro_ogar_3201,
Pan troglodytes	ENSPTRG00000003377	1 retrocopy	retro_ptro_753,
Rattus norvegicus	ENSRNOG00000014341	2 retrocopies	retro_rnor_2220, retro_rnor_2872,
Sorex araneus	ENSSARG00000000266	1 retrocopy	retro_sara_405 ,
Sus scrofa	ENSSSCG00000013395	2 retrocopies	retro_sscr_639, retro_sscr_640,
Tarsius syrichta	ENSTSYG00000000445	2 retrocopies	retro_tsyr_196, retro_tsyr_367,
Tursiops truncatus	ENSTTRG00000013943	1 retrocopy	retro_ttru_897,