RetrogeneDB ID: retro_ogar_41

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873547.1:3828660..3829506(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025614
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000008220
• Aliases: None
• Description: None

Sequence

>retro_ogar_41
CTTCTTGGGAATTACTGTGATGCTATTGCTGATGCAAAGAAGTCTCTAGAACTCAATCCAAATAATTCTTCTGCTACTCT
GAGAAAAGGGATTTCTGAATACCATGAAAAAAATGATGCTGCAGCTCTAGAAACTTTTACAGAAAGACAAAAATTAGACA
GTACAGATCCTGATTTCACTGTCTGGATTAAAAGGTGTCACAAAGCTCAGAATGGATCAGAATCTGGGGTGTCTACATCC
CAGCGGACTCATCAGTCGAAAATCAAGTATGACTGGTATCAAGCAGAATCTCATGTAATCATTACACTTATGATCAAGAA
TGTTCAGAAGAACAATGTAAATGTAGAATTTTCGGAAAAAGAGTTGTCTGCTTTGGTGAAACTCCCATCTGGAGAGGACT
ACGATCTGAAACTGAGACCACTTTATCCTATTATACCAGAACAGAGCACATTTAAAGTACTTTCAACAAAGATTGAAATT
AAAATGAAAAAGCCAGAGGCTGTGAGATGGGAAACCTTAGAGGGGCAAGGAGATGTGTCTAAGCCAAAACAATTCATAGC
AGATGTAAAGAATCTATATCTATCATCATCTCAGTTTACAAGAAATTGGGATAAATTGGTTGGTGAGATCAAAGAAGAAG
AAAAGAATGAGAAGTTGGAGGGAGATGCAGCTTTAAACAAATTATTTCAGCAGATCTATTCAGATGGTTCTGATGAAGTT
AAACGTGCCATGAACAAATCATTCATGGAGTCTGGTGGTACAGTTTTAAGTACCAACTGGTCTGATGTAGGTAAAAGAAA
GGTTGAAATCAACCCTCCTGATGATATGGAATGGAAAAAATACTAA

Alignment

ORF - retro_ogar_41 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.42 %
• Parental protein coverage: 61.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TDADFTVWIKRCQEAQNVGSESGV----RTHQSKIKYDWYQTESQVIITLMIKNVQKNNVNVEFSEKELS
          TD.DFTVWIKRC..AQN.GSESGV....RTHQSKIKYDWYQ.ES.VIITLMIKNVQKNNVNVEFSEKELS
Retrocopy TDPDFTVWIKRCHKAQN-GSESGVSTSQRTHQSKIKYDWYQAESHVIITLMIKNVQKNNVNVEFSEKELS

Parental  ALVKLPSGEDYNLKLRLLYPIIPEQSTFKVLSTKIEIKMKKPEAVRWETLEGQGDVSKPKQFIADVKNLY
          ALVKLPSGEDY.LKLR.LYPIIPEQSTFKVLSTKIEIKMKKPEAVRWETLEGQGDVSKPKQFIADVKNLY
Retrocopy ALVKLPSGEDYDLKLRPLYPIIPEQSTFKVLSTKIEIKMKKPEAVRWETLEGQGDVSKPKQFIADVKNLY

Parental  PSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDV
          .SSS..TRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDV
Retrocopy LSSSQFTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDV

Parental  GKRKVEINPPDDMEWKKY
          GKRKVEINPPDDMEWKKY
Retrocopy GKRKVEINPPDDMEWKKY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_41 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008606	2 retrocopies	retro_amel_353, retro_amel_896,
Canis familiaris	ENSCAFG00000004823	1 retrocopy	retro_cfam_136,
Callithrix jacchus	ENSCJAG00000003604	1 retrocopy	retro_cjac_310,
Cavia porcellus	ENSCPOG00000003374	1 retrocopy	retro_cpor_110,
Dasypus novemcinctus	ENSDNOG00000002991	1 retrocopy	retro_dnov_2621,
Homo sapiens	ENSG00000165416	1 retrocopy	retro_hsap_2628,
Gorilla gorilla	ENSGGOG00000006797	1 retrocopy	retro_ggor_1840,
Nomascus leucogenys	ENSNLEG00000015700	1 retrocopy	retro_nleu_640,
Otolemur garnettii	ENSOGAG00000008220	1 retrocopy	retro_ogar_41 ,
Pan troglodytes	ENSPTRG00000005906	1 retrocopy	retro_ptro_1773,