Parental gene:

SUGT1, ENSPTRG00000005906

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:13:52301157..52336723(+)


>ENSPTRG00000005906
ATGGCGGCGGCTGCAGCAGGAACTGCAACATCCCAGAGGTTTTTCCAGAGCTTCTCGGATGCCCTAATCGACGAGGACCC
CCAGGCGGCGTTAGAGGAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATT
GTCACATTCTTCTCGGGAATTACTGTGTTGCTGTTGCTGATGCAAAGAAGTCTCTAGAACTCAATCCAAATAATTCCACT
GCTATGCTGAGAAAAGGAATATGTGAATACCATGAAAAAAACTATGCTGCTGCCCTAGAAACTTTTACAGAAGGACAAAA
ATTAGATATAGAGACGGGGTTTCATCGTGTTGGCCAGGCTGGTCTCCAACTCTTGACCTCAAGTGATCCACCTGCCTTGG
ACTCCCAAAGTGCTGGGATTACAGGTGCAGATGCTAATTTCAGTGTCTGGATTAAAAGGTGTCAAGAAGCTCAGAATGGC
TCAGAATCTGAGGTGTGGACTCATCAGTCAAAAATCAAGTATGACTGGTATCAAACAGAATCTCAAGTAGTCATTACACT
TATGATCAAGAATGTTCAGAAGAATGATGTAAATGTGGAATTTTCAGAAAAAGAGTTGTCTGCTTTGGTTAAACTTCCTT
CTGGAGAGGATTACAATTTGAAACTGGAACTTCTTCATCCTATAATACCAGAACAGAGCACGTTTAAAGTACTTTCAACA
AAGATTGAAATTAAACTGAAAAAGCCAGAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGTGCCTACGCCAAA
ACAATTCGTAGCAGATGTAAAGAACCTATATCCATCATCATCTCCTTATACAAGAAATTGGGATAAATTGGTTGGTGAGA
TCAAAGAAGAAGAAAAGAATGAGAAGTTGGAGGGAGATGCAGCTTTAAACAGATTATTTCAGCAGATCTATTCAGATGGT
TCTGATGAAGTGAAACGTGCCATGAACAAATCCTTTATGGAGTCGGGTGGTACAGTTTTGAGTACCAACTGGTCTGATGT
AGGTAAAAGGAAAGTTGAAATCAATCCTCCTGATGATATGGAATGGAAAAAGTACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 9 .38 RPM
SRP007412_cerebellum 10 .07 RPM
SRP007412_heart 13 .70 RPM
SRP007412_kidney 16 .76 RPM
SRP007412_liver 18 .20 RPM
SRP007412_testis 66 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000008606 ortholog_one2many 2 retrogenes
retro_amel_353, retro_amel_896,
Canis familiaris ENSCAFG00000004823 ortholog_many2many 1 retrogene
retro_cfam_136,
Callithrix jacchus ENSCJAG00000003604 ortholog_one2many 1 retrogene
retro_cjac_310,
Cavia porcellus ENSCPOG00000003374 ortholog_many2many 1 retrogene
retro_cpor_110,
Dasypus novemcinctus ENSDNOG00000002991 ortholog_one2many 1 retrogene
retro_dnov_2621,
Homo sapiens ENSG00000165416 ortholog_one2one 1 retrogene
retro_hsap_2628,
Gorilla gorilla ENSGGOG00000006797 ortholog_one2one 1 retrogene
retro_ggor_1840,
Nomascus leucogenys ENSNLEG00000015700 ortholog_one2one 1 retrogene
retro_nleu_640,
Otolemur garnettii ENSOGAG00000008220 ortholog_many2many 1 retrogene
retro_ogar_41,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1773 89.91 61.92
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Download FASTA sequences of all ENSPTRG00000005906 retrocopies