RetrogeneDB ID: retro_ogar_1633

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873557.1:3675466..3675761(-)
• Located in intron of: ENSOGAG00000003969

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NDUFA2
• Ensembl ID: ENSOGAG00000027727
• Aliases: None
• Description: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa [Source:HGNC Symbol;Acc:7685]

Sequence

>retro_ogar_1633
ATGGTGGTGGCTGCAGCAGGTCGGTGAATCAGGACAAAGCCAGACTGTGTGAGATTTGCATCTACTTATGCCAGCGCTTA
CCTGGCAGCCAGGGTGTCAGGGACTTCATTGAGAAACACTATGTGGTGGTCAAGGAGGCAAACCCTGACCTGCCCATCCT
AATCCAGAATACTCCAATGTACAGCCCAAACTCTGGGCCCACTATGTGTGTGGCCAAGAGAAGAATGTCTTATTGAATAA
TTTCAGTACTGATCAGGTAACCGCAACCCTGGAGAATGTGTTAAGTGGCAAAGCC

Alignment

ORF - retro_ogar_1633 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.24 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MAAAAAGRGIGTK-LGLREIRIHLCQRSPGSQGVRDFIEKRYVEVKKANPDLPILIR-ECSDVQPKLWAR
          M..AAAGR.I.TK...L.EI.I.LCQR.PGSQGVRDFIEK.YV.VK.ANPDLPILI..E.S.VQPKLWA.
Retrocopy MVVAAAGR*IRTK<ARLCEICIYLCQRLPGSQGVRDFIEKHYVVVKEANPDLPILIQ<EYSNVQPKLWAH

Parental  YAFGQEKNVSLNNFSTDQVTRALENVLSGKA
          Y..GQEKNV.LNNFSTDQVT..LENVLSGKA
Retrocopy YVCGQEKNVLLNNFSTDQVTATLENVLSGKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1633 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015041	2 retrocopies	retro_btau_124, retro_btau_151,
Canis familiaris	ENSCAFG00000005861	1 retrocopy	retro_cfam_1343,
Cavia porcellus	ENSCPOG00000009178	2 retrocopies	retro_cpor_1045, retro_cpor_1290,
Latimeria chalumnae	ENSLACG00000005796	1 retrocopy	retro_lcha_48,
Mus musculus	ENSMUSG00000014294	1 retrocopy	retro_mmus_2579,
Nomascus leucogenys	ENSNLEG00000009325	1 retrocopy	retro_nleu_67,
Otolemur garnettii	ENSOGAG00000027727	1 retrocopy	retro_ogar_1633 ,
Pongo abelii	ENSPPYG00000015860	1 retrocopy	retro_pabe_938,
Rattus norvegicus	ENSRNOG00000017571	1 retrocopy	retro_rnor_262,
Sus scrofa	ENSSSCG00000014371	1 retrocopy	retro_sscr_48,
Tupaia belangeri	ENSTBEG00000005978	1 retrocopy	retro_tbel_2688,