RetrogeneDB ID:

retro_mputfur_1234

Retrocopy
location
Organism:Ferret (Mustela putorius furo)
Coordinates:GL897049.1:4018994..4019422(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:UBE2I
Ensembl ID:ENSMPUG00000015763
Aliases:None
Description:ubiquitin-conjugating enzyme E2I [Source:HGNC Symbol;Acc:12485]


Retrocopy-Parental alignment summary:






>retro_mputfur_1234
GCCTGGAGAAAGGACCACCATTTGGCTTGGTGGCTGTCCCAACAAAAAATCCTGGAAGCAGGATGAACCTCATGACCTGA
AAATATGCCATTCCAGGCAAGGAAGAGACACCATGGGAAAGAGACTTGTTTAGACTGTGGATGCTTTTCAGGGACCACTA
TCCATCCTCACCCCCAAAATGCCAATTTTAGCCACTACTGTTTCACCCAAATATGTACCCATTGGGCACAGTGGGCCTGT
CCATCCTTGAGGAGGAAAGGGACTGGAGGCCAGCCATCACAATTAAGCAGATCTTGTTAGGAATACAGGAACTTTTAAAT
TAACCAAATATCCAGGACTCAGCCCAAACAGAGGCTCACACAATTTACGGCCAAAACAAAGTGGGCTACAAGAAGAGGGT
TTGAGCACAAGCCAAGAAATTCACACCT

ORF - retro_mputfur_1234 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.69 %
Parental protein coverage: 90.51 %
Number of stop codons detected: 4
Number of frameshifts detected: 1


Retrocopy - Parental Gene Alignment:

ParentalAWRKDH-PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH
AWRKDH.PFG.VAVPTKNP...MNLM....AIPGK..TPWE..LF.L.MLF.D.YPSSPPKC.F.P.LFH
RetrocopyAWRKDH<PFGLVAVPTKNPGSRMNLMT*KYAIPGKEETPWERDLFRLWMLFRDHYPSSPPKCQF*PLLFH
ParentalPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAK
PN.YP.GTV.LSILEE..DWRPAITIKQILLGIQELLN.PNIQD.AQ.EA.TIY.QN.V.Y.KRV.AQAK
RetrocopyPNMYPLGTVGLSILEEERDWRPAITIKQILLGIQELLN*PNIQDSAQTEAHTIYGQNKVGYKKRV*AQAK
ParentalKFAP
KF.P
RetrocopyKFTP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Mustela putorius furo was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mputfur_1234 retrocopy.

TSS - click to see more details

Mustela putorius furo was not studied using FANTOM5 data.

Lab - click to see more details

retro_mputfur_1234 was not experimentally validated.

Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 18 parental genes, and 41 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000077211 retrocopy
retro_amel_1843,
Bos taurus ENSBTAG000000388661 retrocopy
retro_btau_1470,
Canis familiaris ENSCAFG000000314494 retrocopies
retro_cfam_1363, retro_cfam_1991, retro_cfam_2090, retro_cfam_541,
Callithrix jacchus ENSCJAG000000132491 retrocopy
retro_cjac_2914,
Cavia porcellus ENSCPOG000000104311 retrocopy
retro_cpor_156,
Equus caballus ENSECAG000000158311 retrocopy
retro_ecab_350,
Felis catus ENSFCAG000000272912 retrocopies
retro_fcat_1994, retro_fcat_873,
Loxodonta africana ENSLAFG000000183181 retrocopy
retro_lafr_541,
Myotis lucifugus ENSMLUG000000082292 retrocopies
retro_mluc_1112, retro_mluc_1327,
Macaca mulatta ENSMMUG000000036541 retrocopy
retro_mmul_981,
Mustela putorius furoENSMPUG00000015763 1 retrocopy
retro_mputfur_1234 ,
Mus musculus ENSMUSG000000151204 retrocopies
retro_mmus_1341, retro_mmus_1997, retro_mmus_3182, retro_mmus_3419,
Nomascus leucogenys ENSNLEG000000085251 retrocopy
retro_nleu_1298,
Otolemur garnettii ENSOGAG000000014284 retrocopies
retro_ogar_2367, retro_ogar_2731, retro_ogar_548, retro_ogar_641,
Rattus norvegicus ENSRNOG0000001790711 retrocopies
retro_rnor_1051, retro_rnor_1448, retro_rnor_1764, retro_rnor_1913, retro_rnor_2036, retro_rnor_2147, retro_rnor_2301, retro_rnor_2423, retro_rnor_2927, retro_rnor_708, retro_rnor_832,
Sarcophilus harrisii ENSSHAG000000070341 retrocopy
retro_shar_218,
Sus scrofa ENSSSCG000000215601 retrocopy
retro_sscr_319,
Ictidomys tridecemlineatus ENSSTOG000000102333 retrocopies
retro_itri_1341, retro_itri_1459, retro_itri_1601,


Copyright © RetrogeneDB 2014-2017