RetrogeneDB ID: retro_mluc_2402

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430321:204554..205709(-)
• Located in intron of: ENSMLUG00000027082

Retrocopy information

• Ensembl ID: ENSMLUG00000013030
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001847
• Aliases: None
• Description: None

Sequence

>retro_mluc_2402
AGGGGCAACAGAGGCCGAGGTCATGGCGGGCGCTTTGGTTCCAGAGGATGCCCAGAAGGAGGGTTCAGGCCCTCTGTGCC
ACATATCCCATTTGATTTCTATTTGTGTGAAATGGCCTTCCCTCGGGTTAAGTCAGCACCTGATGAATCTTCCTCCAGTG
AGGCATCACTGAAAAGAAATCAGGACCTTCCTCCTAATTCTGCTGAACAGGCCACTATCCTTTCTCTGGTGACAAAAATA
AACAATGTGATTGACAATTAGATTGTGGCTCCAGGGACATTTGAAGTGCAAATTGAAGAAGTGCGACAGGTTGGATCATA
TAAAAAGGGAACAATGACTACAGGACATAATGTGGCTGACCTGGTGGTAATCCTAAAGATTTTGCCAACGCTGGAAGCTG
TTGCTGCCCTCAGGAACAAAGTCTTGGAAAGCCTAAGAGCACAGGATCCTTCTGAAGTTTTGACCATGCTGACCAATGAA
ACTGGCTTTGAGATCAGTTCTTCTGATGCTGCAGTGAAGATTCTCATACAACAGTGCCACCCGATCCCCGAAAACTGGAT
CCAGAAGTCCCTTTGGACATCGAGGTGTTGCAGAGTGCCTTAGCAGCCATCCGACATGCTCACTGGTTTGAAGAAAATGC
TTCTCAGTCCACAGTTAAAGTTCTCATCAGACTTCTGAAGGACCTGAGGATTCGTTTTCCTGGCTTTGAGCCCCTCACAC
CCTGGATCCTTGACCTACTTGGGCACTATGCCGTGATGAACAACCCCACCAGACAGCCTTTGGCCCTAAATGTGGCATAC
AGGTGTTGCTTGCAGATTCTGGCTGCAGGACTGTTCTTGCCAGGGTCAATGGGTATCACAGACCCCTATAAGAGTAGCAA
CTTCAGAGTACACACAGTCTTGACTTTGGAACAGCAGGACATGGTCTGCTTCACAGCCCGAATCCTCTCACATGGTGGCT
TTAGGAAGATGCTTGGCCAGGAGGATGATGCCAGCTATCTTGCTTCTGAAATATCTACCTGGGATGGAGTGATAGTGACA
CCTTCAGAAAAGGCTTAATGAGAAGCCACCAGAGAAGAAGGAAGGGGAGGAAGAGGAGGAGAATACAGAAGAACCACTTC
AAGGAGAGGAGGAGGAAAGCATGGAGGCTCAGGAG

Alignment

ORF - retro_mluc_2402 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.54 %
• Parental protein coverage: 99.74 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDESSFSEALLKRNQDLAPNSAEQ
          RG.RGRG.GGRFGSRG.P.GGFRP.VPHIPFDFYLCEMAFPRVK.APDESS.SEA.LKRNQDL.PNSAEQ
Retrocopy RGNRGRGHGGRFGSRGCPEGGFRPSVPHIPFDFYLCEMAFPRVKSAPDESSSSEASLKRNQDLPPNSAEQ

Parental  ASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNK
          A.ILSLVTKINNVIDN.IVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAAL.NK
Retrocopy ATILSLVTKINNVIDN*IVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALRNK

Parental  VVESLRAQDPSEVLTMLTNETGFEISSSDATVKILI-TTVPPNLRKLDPELHLDIKVLQSALAAIRHARW
          V.ESLRAQDPSEVLTMLTNETGFEISSSDA.VKILI.TTVPP..RKLDPE..LDI.VLQSALAAIRHA.W
Retrocopy VLESLRAQDPSEVLTMLTNETGFEISSSDAAVKILI<TTVPPDPRKLDPEVPLDIEVLQSALAAIRHAHW

Parental  FEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLF
          FEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYR.CLQILAAGLF
Retrocopy FEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRCCLQILAAGLF

Parental  LPGSMGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVI
          LPGSMGITDP..S.NFRVHTV.TLEQQDMVC.TA....RILSHGGFRK.LGQE.DASYLASEISTWDGVI
Retrocopy LPGSMGITDPYKSSNFRVHTVLTLEQQDMVCFTA----RILSHGGFRKMLGQEDDASYLASEISTWDGVI

Parental  VTPSEKA-YEKPPEKKEGEEEEENTEEPPQGEEEESMETQE
          VTPSEKA..EKPPEKKEGEEEEENTEEP.QGEEEESME.QE
Retrocopy VTPSEKA>NEKPPEKKEGEEEEENTEEPLQGEEEESMEAQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2402 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017530	1 retrocopy	retro_cfam_1358,
Erinaceus europaeus	ENSEEUG00000013100	1 retrocopy	retro_eeur_500,
Homo sapiens	ENSG00000143621	2 retrocopies	retro_hsap_1405, retro_hsap_2654,
Macropus eugenii	ENSMEUG00000003651	1 retrocopy	retro_meug_1174,
Microcebus murinus	ENSMICG00000013730	1 retrocopy	retro_mmur_206,
Myotis lucifugus	ENSMLUG00000001847	3 retrocopies	retro_mluc_1046, retro_mluc_217, retro_mluc_2402 ,
Myotis lucifugus	ENSMLUG00000008365	1 retrocopy	retro_mluc_2581,
Macaca mulatta	ENSMMUG00000008149	1 retrocopy	retro_mmul_1516,
Oryctolagus cuniculus	ENSOCUG00000005430	1 retrocopy	retro_ocun_1216,
Pongo abelii	ENSPPYG00000000800	1 retrocopy	retro_pabe_2318,
Pan troglodytes	ENSPTRG00000001358	2 retrocopies	retro_ptro_1789, retro_ptro_963,
Ictidomys tridecemlineatus	ENSSTOG00000000667	1 retrocopy	retro_itri_130,
Tarsius syrichta	ENSTSYG00000012061	3 retrocopies	retro_tsyr_1448, retro_tsyr_1745, retro_tsyr_496,