RetrogeneDB ID: retro_mluc_1046

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429790:7544939..7545887(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001847
• Aliases: None
• Description: None

Sequence

>retro_mluc_1046
CTTTCTCTGGTGACAAAAATAAACAATGTGACTGACAATTAGATTGTGGCTCCAGGGGCATTTGAAGTGCAAATTGAAGA
AGTGCGACAGGCTGGATCATATAAAAAGGAAACAATGACTACAGGACATCATGTGGCTGACCTGGTGGTAATCCTAAAGA
TTTTGCCAACGTTGGAAGCTGTTGCTGCCCTAGGGAACACAGCCGTGGAAAGCCTAAGAGCACAGGATCCTTCTGAGGTT
TGGACCATGCTGACCAATGAAACTGGCTTTGAGATCAGTTCTTCTGATGCTACAGTGAAGATTCTCATTACAACAGTGCC
ACCCAATCTCCGAAAACTGGGTCCAGAACTCCATTAGGACATCAAGGTATTGCAGAGTGCCTTAGCAGCCATCCACCATG
CCCGCTGGTTTGAAGAAAATGCTTCTCAGTCCACAGTTAAAGTTCTCATCAGACTTCTGAAGGACCCGAGGATTCGTTTT
CCTGGCTTTGAGCCCCTCACACCCTGGATCCTTGACCTACTTGGGCACTGTGCCGTGATGAACGACCCCACCAGACAGCC
TTTGGCCCTACATGTGGCATACAGGCGTTGCTTGCAGATTCTGGCTGCAGGACTGTTCTTGCCAGGGTCAGTGGGTATCA
CAGACCCCTGTGAGAGTGGCACCTTCAGAGTACACACGGTCATGACTTTGGAACAGCAGGACATGGTCTGCTACACAGCT
CAGACTCTGGTCCGAATCCTCTCACATGGTGGCTTTAGGAAGATCCTTGGCCAGGAGGGTGATGCCAGCGATCTTGCTTC
TGAAATGTCTACCTGGGATGGAGTGATAGTGACACCTTCAGAAGAGGCTTATGAGAAGCCACCAGAGAAGAAGGAAGGGG
AGGAAGAGGAGGAGAATACAGAAGAACCACCTCAAGGAGAGGAGGAGGAAAGCATCGAGACTCAGGAG

Alignment

ORF - retro_mluc_1046 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.04 %
• Parental protein coverage: 81.03 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGNKVVE
          LSLVTKINNV.DN.IVAPG.FEVQIEEVRQ.GSYKK.TMTTGH.VADLVVILKILPTLEAVAALGN..VE
Retrocopy LSLVTKINNVTDN*IVAPGAFEVQIEEVRQAGSYKKETMTTGHHVADLVVILKILPTLEAVAALGNTAVE

Parental  SLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARWFEEN
          SLRAQDPSEV.TMLTNETGFEISSSDATVKILITTVPPNLRKL.PELH.DIKVLQSALAAI.HARWFEEN
Retrocopy SLRAQDPSEVWTMLTNETGFEISSSDATVKILITTVPPNLRKLGPELH*DIKVLQSALAAIHHARWFEEN

Parental  ASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLFLPGS
          ASQSTVKVLIRLLKD.RIRFPGFEPLTPWILDLLGH.AVMN.PTRQPLAL.VAYRRCLQILAAGLFLPGS
Retrocopy ASQSTVKVLIRLLKDPRIRFPGFEPLTPWILDLLGHCAVMNDPTRQPLALHVAYRRCLQILAAGLFLPGS

Parental  MGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVIVTPS
          .GITDPCESG.FRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDAS.LASE.STWDGVIVTPS
Retrocopy VGITDPCESGTFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASDLASEMSTWDGVIVTPS

Parental  EKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE
          E.AYEKPPEKKEGEEEEENTEEPPQGEEEES.ETQE
Retrocopy EEAYEKPPEKKEGEEEEENTEEPPQGEEEESIETQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1046 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017530	1 retrocopy	retro_cfam_1358,
Erinaceus europaeus	ENSEEUG00000013100	1 retrocopy	retro_eeur_500,
Homo sapiens	ENSG00000143621	2 retrocopies	retro_hsap_1405, retro_hsap_2654,
Macropus eugenii	ENSMEUG00000003651	1 retrocopy	retro_meug_1174,
Microcebus murinus	ENSMICG00000013730	1 retrocopy	retro_mmur_206,
Myotis lucifugus	ENSMLUG00000001847	3 retrocopies	retro_mluc_1046 , retro_mluc_217, retro_mluc_2402,
Myotis lucifugus	ENSMLUG00000008365	1 retrocopy	retro_mluc_2581,
Macaca mulatta	ENSMMUG00000008149	1 retrocopy	retro_mmul_1516,
Oryctolagus cuniculus	ENSOCUG00000005430	1 retrocopy	retro_ocun_1216,
Pongo abelii	ENSPPYG00000000800	1 retrocopy	retro_pabe_2318,
Pan troglodytes	ENSPTRG00000001358	2 retrocopies	retro_ptro_1789, retro_ptro_963,
Ictidomys tridecemlineatus	ENSSTOG00000000667	1 retrocopy	retro_itri_130,
Tarsius syrichta	ENSTSYG00000012061	3 retrocopies	retro_tsyr_1448, retro_tsyr_1745, retro_tsyr_496,