RetrogeneDB ID: retro_mmur_206

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1766:1255..1866(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ILF2
• Ensembl ID: ENSMICG00000013730
• Aliases: None
• Description: interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:6037]

Sequence

>retro_mmur_206
ATGAGGCGTGACAGAGGCCATGGTCGTGGTGGGCGCTTTGGTTCCAGAGGTGGCCCAGGAGGAGGGTTCAGGCCCTTTGT
GCCACATATTCCATTTGATTTCTATTTGTGTGAAATGGCCTTCCCCGGGGTGAAGCCAGCGCCTGATGAAACTTCTTTTC
AGTGAGGCCTTGCTGAAGAGGAATCAGGACCTTGCTCCCAATTCTGCTGAACAGGCCTCTATCCTTTCTCTGGTTACAAA
AATGAATAATGTGATTGAAATTTGATTGTGGGTCCAGGAACATTTGAAGTGCAAATTGAAGAAGTCCGACAGGTAGGATC
ATATAAAAAGGGAACAATGACAACAGGACACAATGTGGCTGACCTGGTAGTAATGCTAAAGATTCTGCCAACATTGGAAG
CTGTTGCTGCCCTGGGGAACAAAGTCGTGGAAAGCCTAAGAGCGCAGGATTCTTCTGAAGTTTTGACCATGCTGACCAAT
GTAACTGGCTTTGAAATCAGTTCTCTGATGCTATGGTGAAGATTCTCATTACAACAGTGCCACCCAATCTCCAAAAACTG
GACCCAGAACTCCACTTGGATATAAAGGTGGATATACAGAGTGTCTTAGCA

Alignment

ORF - retro_mmur_206 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.79 %
• Parental protein coverage: 52.05 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MRGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDETSF-SEALLKRNQDLAPNSA
          MR.DRG.GRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFP.VKPAPDETSF.SEALLKRNQDLAPNSA
Retrocopy MRRDRGHGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPGVKPAPDETSF>SEALLKRNQDLAPNSA

Parental  EQASILSLVTKINNVID-NLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAAL
          EQASILSLVTK.NNVI..NLIV.PGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVV.LKILPTLEAVAAL
Retrocopy EQASILSLVTKMNNVIE<NLIVGPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVMLKILPTLEAVAAL

Parental  GNKVVESLRAQDPSEVLTMLTNETGFEISS-SDATVKILITTVPPNLRKLDPELHLDIKV-LQSALA
          GNKVVESLRAQD.SEVLTMLTN.TGFEISS.SDA.VKILITTVPPNL.KLDPELHLDIKV..QS.LA
Retrocopy GNKVVESLRAQDSSEVLTMLTNVTGFEISS<SDAMVKILITTVPPNLQKLDPELHLDIKVDIQSVLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_206 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_206 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000143621	2 retrocopies	retro_hsap_1405, retro_hsap_2654,
Macropus eugenii	ENSMEUG00000003651	1 retrocopy	retro_meug_1174,
Microcebus murinus	ENSMICG00000013730	1 retrocopy	retro_mmur_206 ,
Myotis lucifugus	ENSMLUG00000001847	3 retrocopies	retro_mluc_1046, retro_mluc_217, retro_mluc_2402,
Oryctolagus cuniculus	ENSOCUG00000005430	1 retrocopy	retro_ocun_1216,
Pongo abelii	ENSPPYG00000000800	1 retrocopy	retro_pabe_2318,
Ictidomys tridecemlineatus	ENSSTOG00000000667	1 retrocopy	retro_itri_130,
Tarsius syrichta	ENSTSYG00000012061	3 retrocopies	retro_tsyr_1448, retro_tsyr_1745, retro_tsyr_496,