RetrogeneDB ID: retro_mluc_2035

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429997:257070..257487(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DERL1
• Ensembl ID: ENSMLUG00000009085
• Aliases: None
• Description: None

Sequence

>retro_mluc_2035
ATGTCTGACATCGGGGACTGGTTCAGGAGCATCCCGGCCATCATGCACTATTGCTTCACCACCACCAGGGAGGTGCCCGT
GGTTGGCAAACTAGGTCTCATCAGCCTGGCCTACTTCATCCTCTGGCCCAAAGCCTCTCTCTACTGCTTCCAAATTTGGA
GACCCATCACTGCCACCTTTTTTGCCCCTGTGGATCCAGGAACTGGATCTCTTTATTTGGTCAATTTATATTTCTTATAT
CAGTATTCTACATGACTCAAAACAGGAGCTTTTGATGGGAGGCCAGGGACTATTTATTTATTCATGCTCCTCAAAAACTG
GGTGTGCATTGTCATTACTGGCTTAACAATGGACATGCAGTTGCTGATGATTCCCCTGATCATGCCCATGCTTTATGTCT
GGGCCCAGCTGGACAGA

Alignment

ORF - retro_mluc_2035 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.72 %
• Parental protein coverage: 55.34 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSDIGDWFRSIPAITRYWFAATVAVPLIGKLGLISPAYFVLWPEAFLYRFQIWRPITATFFFPVGPGTGF
          MSDIGDWFRSIPAI..Y.F..T..VP..GKLGLIS.AYF.LWP.A.LY.FQIWRPITATFF.PV.PGTG.
Retrocopy MSDIGDWFRSIPAIMHYCFTTTREVPVVGKLGLISLAYFILWPKASLYCFQIWRPITATFFAPVDPGTGS

Parental  LYLVNLYFLYQYSTRLETGAFDGRPAD-YLFMLLFNWICIVTKITGLAMDMQLLMIPLIMSVLYVWAQLN
          LYLVNLYFLYQYST.L.TGAFDGRP...YLFMLL.NW.CIV..ITGL.MDMQLLMIPLIM..LYVWAQL.
Retrocopy LYLVNLYFLYQYST*LKTGAFDGRPGTIYLFMLLKNWVCIV--ITGLTMDMQLLMIPLIMPMLYVWAQLD

Parental  R
          R
Retrocopy R

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2035 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006519	1 retrocopy	retro_amel_364,
Canis familiaris	ENSCAFG00000000974	1 retrocopy	retro_cfam_754,
Cavia porcellus	ENSCPOG00000011870	1 retrocopy	retro_cpor_1520,
Myotis lucifugus	ENSMLUG00000009085	1 retrocopy	retro_mluc_2035 ,
Mustela putorius furo	ENSMPUG00000001132	1 retrocopy	retro_mputfur_1082,
Mus musculus	ENSMUSG00000022365	1 retrocopy	retro_mmus_919,
Rattus norvegicus	ENSRNOG00000005551	2 retrocopies	retro_rnor_1206, retro_rnor_2717,
Sarcophilus harrisii	ENSSHAG00000011915	1 retrocopy	retro_shar_588,