RetrogeneDB ID: retro_mluc_2024

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429991:1823075..1824077(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030297
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: HNRNPAB
• Ensembl ID: ENSMLUG00000003380
• Aliases: None
• Description: None

Sequence

>retro_mluc_2024
ATGTCGGAAACCGGTGAGGAGCAGCTCATGGAGACGACGGGCGCCACCGAGAACGGGCACGAGGCCGCCCCTGAAGGTGA
GTCACCGGCCGGGCCAGGCAGCGGGGCTGCAGCAAGCGCTGGAGGCGGGAGCGTGGCACCTCCAGCCCGCAACCAGAACT
GCACTGAGGGCGACCAGATCAACGCCAGCAAGGAAGAGGAGGATGCAGGAAAAATGTTTGTTGGTCACCTGAGCTGGGAT
ACCAGCAGAAAGGACCTAAAGGATTATTTTACCAAATTTGGAGAGGTCGTTGACTGTACAATAAAAATGGATCCCAACAC
TGGCCGGTCAAAAGGATTTGGGTTTATTCTCTTCAAAGATGCAGCTAGTGTGGAGAAGGTCCTCGACCAGAAGGAGCACA
GGCTGGATGGCCGTGTCATCGACCCCAAAAAGGCGATGGCCATGAAGAAGGAGCCTGTAAAGAAAATTTTTGTGGGGGGT
CTGAATCCTGAAGCCACTGAGGAGAAAATCAGAGAGCACTTTGGCGAGTTTGGGGAGATCGAGACCATTGATCTTCCAAT
GGATCCAAAGTCAAACAAACGACGAGGTTTTGTTTTCATCACCTTTAAAGAGGAAGAACCTGTGAAGAAGGTCCTAGAGA
AAAAGTTCCACACCATCAGTGGAAGTAAGTGTGAAATCAAGGTGGCTCTGCCCAGAAAAGTCTATCAACAGCAGCAGAAT
GGCTCTGGGGGCTGTGGAAACCGCAACAGAAGGAACCGAGGCCGTGGTGGTGGCGGTGGAAGTGGAGGAGGTCGGAGTCA
GAGTTTTAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCTACCAGCAGGGCTATGGGCCCGGCTATGACGGCT
ACGACTACTCGCCCCATGGCTATTATGGCTACGGCCCCGGATGCGACTACAGTCAGGGTAGTACGAATTACAGGAGGAGC
CATCGACGACGTGGTGGCCATCAGAATAACTACAAGCCATAC

Alignment

ORF - retro_mluc_2024 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.84 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSETGEEQLMETTGATENGHEAAPEGESPAGPGSGAAASAGGGSAAPPAGNQNGAEGDKINASKEEEDAG
          MSETGEEQLMETTGATENGHEAAPEGESPAGPGSGAAASAGGGS.APPA.NQN..EGD.INASKEEEDAG
Retrocopy MSETGEEQLMETTGATENGHEAAPEGESPAGPGSGAAASAGGGSVAPPARNQNCTEGDQINASKEEEDAG

Parental  KMFVGHLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHKLDGRVI
          KMFVGHLSWDTS.KDLKDYFTKFGEVVDCTIKMDPNTGRS.GFGFILFKDAASVEKVLDQKEH.LDGRVI
Retrocopy KMFVGHLSWDTSRKDLKDYFTKFGEVVDCTIKMDPNTGRSKGFGFILFKDAASVEKVLDQKEHRLDGRVI

Parental  DPKKAMAMKKEPVKKIFVGGLNPEATEEKIREYFGEFGEIEAIDLPMDPKSNKRRGFVFITFKEEEEPVK
          DPKKAMAMKKEPVKKIFVGGLNPEATEEKIRE.FGEFGEIE.IDLPMDPKSNKRRGFVFITFK.EEEPVK
Retrocopy DPKKAMAMKKEPVKKIFVGGLNPEATEEKIREHFGEFGEIETIDLPMDPKSNKRRGFVFITFK-EEEPVK

Parental  KVLEKKFHTISGSKCEIKVALPRKVYQQQQYGSGGRGNRNRGNRGSGGGGGSGGGQSQSWNQGYGNYWNQ
          KVLEKKFHTISGSKCEIKVALPRKVYQQQQ.GSGG.GNRNR.NRG.GGGGGSGGG.SQS.NQGYGNYWNQ
Retrocopy KVLEKKFHTISGSKCEIKVALPRKVYQQQQNGSGGCGNRNRRNRGRGGGGGSGGGRSQSFNQGYGNYWNQ

Parental  GYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKS-QRRGGHQNNYKPY
          GYGYQQGYGPGY.GYDYSP.GYYGYGPG.DYSQGSTNY..S..RRGGHQNNYKPY
Retrocopy GYGYQQGYGPGYDGYDYSPHGYYGYGPGCDYSQGSTNYRRSHRRRGGHQNNYKPY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2024 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000000241	2 retrocopies	retro_cfam_408, retro_cfam_412,
Homo sapiens	ENSG00000197451	1 retrocopy	retro_hsap_962,
Loxodonta africana	ENSLAFG00000001189	1 retrocopy	retro_lafr_405,
Macropus eugenii	ENSMEUG00000007909	2 retrocopies	retro_meug_169, retro_meug_246,
Myotis lucifugus	ENSMLUG00000000648	3 retrocopies	retro_mluc_2503, retro_mluc_342, retro_mluc_82,
Myotis lucifugus	ENSMLUG00000003380	2 retrocopies	retro_mluc_2024 , retro_mluc_2138,
Myotis lucifugus	ENSMLUG00000007578	1 retrocopy	retro_mluc_34,
Myotis lucifugus	ENSMLUG00000014452	2 retrocopies	retro_mluc_1140, retro_mluc_1761,
Nomascus leucogenys	ENSNLEG00000015775	1 retrocopy	retro_nleu_1611,
Oryctolagus cuniculus	ENSOCUG00000026424	3 retrocopies	retro_ocun_1800, retro_ocun_1811, retro_ocun_950,
Otolemur garnettii	ENSOGAG00000030251	2 retrocopies	retro_ogar_3509, retro_ogar_385,
Pongo abelii	ENSPPYG00000016107	1 retrocopy	retro_pabe_821,
Pan troglodytes	ENSPTRG00000017601	1 retrocopy	retro_ptro_666,