Parental gene:

HNRNPAB, ENSCAFG00000000241

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A/B [Source:HGNC Symbol;Acc:5034]
Organism:Dog (Canis familiaris)
Coordinates:11:3355590..3360480(-)


>ENSCAFG00000000241
AAAATGTTCGTAGGAGGCCTGAGCTGGGATACCAGCAAAAAGGACCTAAAGGATTATTTTACCAAATTTGGAGAGGTCGT
TGACTGTACCATAAAAATGGATCCAAACACTGGCCGGTCAAGAGGGTTTGGGTTTATCCTCTTCAAAGATGCAGCCAGTG
TGGAGAAGGTTCTAGACCAGAAGGAACACAGGCTGGATGGCCGTGTCATTGACCCCAAAAAGGCCATGGCCATGAAAAAG
GATCCGGTAAAGAAAATTTTTGTAGGGGGTCTGAATCCTGAAGCCACTGAGGAGAAGATCAGAGAATACTTTGGCGAGTT
TGGGGAGATTGAGGCCATTGAGCTTCCAATGGATCCAAAGTCGAACAAAAGACGAGGTTTTGTCTTCATCACCTTTAAAG
AAGAAGAACCTGTGAAGAAGGTTCTGGAGAAAAAGTTCCATACCATCAGTGGAAGTAAGAGGTGTGGGTTAGGAGTTGGG
CTCCCTCTCCAGTTAATGACGCAGAGGTGGTTTCTTTCTGTGTCTCGATGTGAAAGGGACAAGAAAGGGAACCGGGGCAG
CGGCGGTGGTGGCGGAAGTGGTAGTCAGAGTCAGAGTTGGAATCAGGGCTACGGCAACTACTGGAACCAGGGCTACGGCT
ACCAGCAGGGCTACGGGCCCGGCTATGGCGGCTACGACTACTCGCCCTATGGCTATTACGGCTACGGCCCCGGCTACGAC
TACAGTCAGGGTAGTACAAATTACGGGAAGAGCCAGCGACGCGGCGGCCACCAGAATAACTACAAGCCATACTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 28 .60 RPM
SRP017611_brain 7 .15 RPM
SRP017611_kidney 11 .82 RPM
SRP017611_liver 8 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006580 other_paralog 16 retrogenes
retro_cfam_1080, retro_cfam_1081, retro_cfam_1170, retro_cfam_1323, retro_cfam_1616, retro_cfam_1844, retro_cfam_2017, retro_cfam_2128, retro_cfam_360, retro_cfam_564, retro_cfam_702, retro_cfam_803, retro_cfam_839, retro_cfam_855, retro_cfam_892, retro_cfam_937,
Canis familiaris ENSCAFG00000008940 within_species_paralog 1 retrogene
retro_cfam_1086,
Canis familiaris ENSCAFG00000013497 other_paralog 12 retrogenes
retro_cfam_1214, retro_cfam_1326, retro_cfam_1388, retro_cfam_1548, retro_cfam_1690, retro_cfam_1816, retro_cfam_265, retro_cfam_272, retro_cfam_400, retro_cfam_625, retro_cfam_65, retro_cfam_836,
Homo sapiens ENSG00000197451 ortholog_one2one 1 retrogene
retro_hsap_962,
Loxodonta africana ENSLAFG00000001189 ortholog_one2one 1 retrogene
retro_lafr_405,
Macropus eugenii ENSMEUG00000007909 ortholog_one2one 2 retrogenes
retro_meug_169, retro_meug_246,
Myotis lucifugus ENSMLUG00000003380 ortholog_one2one 2 retrogenes
retro_mluc_2024, retro_mluc_2138,
Nomascus leucogenys ENSNLEG00000015775 ortholog_one2one 1 retrogene
retro_nleu_1611,
Oryctolagus cuniculus ENSOCUG00000026424 ortholog_one2one 3 retrogenes
retro_ocun_1800, retro_ocun_1811, retro_ocun_950,
Otolemur garnettii ENSOGAG00000030251 ortholog_one2one 2 retrogenes
retro_ogar_3509, retro_ogar_385,
Pongo abelii ENSPPYG00000016107 ortholog_one2one 1 retrogene
retro_pabe_821,
Pan troglodytes ENSPTRG00000017601 ortholog_one2one 1 retrogene
retro_ptro_666,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_408 81.17 57.95
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2. retro_cfam_412 80.52 57.95
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Download FASTA sequences of all ENSCAFG00000000241 retrocopies