RetrogeneDB ID: retro_mluc_2503

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430608:154231..154809(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025650
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000648
• Aliases: None
• Description: None

Sequence

>retro_mluc_2503
GAAGACACTGAAGAACACCACCTAAGAGATTATTTTGAACAGTACGGGAAAACGGAAGTGATTGAAATCATGACTGACTG
AGGCAGTCAGTGGCAAAAAGAGAGGCTTTGCTTCTGTACCCTTTGCTGGCCGTGACTCTGTAGGCAAGGTTGTCATTCAG
AAATACCCTCCTGTGAATGGCCACACTGCGAAGAAGGAAAGCCCCATCTAGGCTAGAGATGGCCCCTGCTTCCTCCAGCC
GAAGAGGCCGACGTGGTTCTGGAAGCTTGGGAGGTGGGCGTGGTGGTGGTTGTGGTGGGAACGACAACTTTGGTCACAGA
GGAAACCTCAGTGGTCAAGGTGGCTGTCGTGGCGGCCGTGGTGGCGGTGGGGGTGGCTATAATGGATTTGGTAATGATGG
TGGTTATGGAGGAGGCGGCCCTAGTCACTCTGGAGGAAGCAGAGGCTATGGAAGTGGTGGACAGGGTTATGGAAAGCAGG
GCAGTGGCGATGGCGGGAGTGGCCGCTATGACAGCTATAACAGTGGAGGAGGTGGAGGAGGTGGAGGCGGCTTTGGCGGT
GGACTGAAGGGTCCTGGG

Alignment

ORF - retro_mluc_2503 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.55 %
• Parental protein coverage: 51.55 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  EDTEEHHLRDYFEQYGKIEVIEIMTDRGS-GKKRGFAFVT-FDDHDSVDKIVNIVQKYHTVNGH-NCEV-
          EDTEEHHLRDYFEQYGK.EVIEIMTD.GS...K....F.T.F...DSV.K.V...QKY..VNGH..CE..
Retrocopy EDTEEHHLRDYFEQYGKTEVIEIMTD*GSQWQKERLCFCT>FAGRDSVGKVV--IQKYPPVNGH<HCEE<

Parental  RKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGF
          RKA.S..EMA.ASSS.RGR.GSG..GGGRGGG.GGNDNFG..GN.SG.GG..G.RGGGG.G..G.G..G.
Retrocopy RKAPSRLEMAPASSSRRGRRGSGSLGGGRGGGCGGNDNFGHRGNLSGQGGCRGGRGGGGGGYNGFGNDG-

Parental  GNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGSGSNFGGG
          ...G..GGG.P..SGGSRGYGSGGQGYG.QGSG.GGSG.YDSYN.........G..G...G.G
Retrocopy ---GYGGGG-PSHSGGSRGYGSGGQGYGKQGSGDGGSGRYDSYNXXXXXXXXXGFGGGLKGPG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2503 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000009228	7 retrocopies	retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Myotis lucifugus	ENSMLUG00000000648	3 retrocopies	retro_mluc_2503 , retro_mluc_342, retro_mluc_82,
Myotis lucifugus	ENSMLUG00000003380	2 retrocopies	retro_mluc_2024, retro_mluc_2138,
Myotis lucifugus	ENSMLUG00000007578	1 retrocopy	retro_mluc_34,
Myotis lucifugus	ENSMLUG00000014452	2 retrocopies	retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo	ENSMPUG00000004620	1 retrocopy	retro_mputfur_34,
Mustela putorius furo	ENSMPUG00000005735	2 retrocopies	retro_mputfur_1378, retro_mputfur_653,
Oryctolagus cuniculus	ENSOCUG00000013350	1 retrocopy	retro_ocun_1675,
Oreochromis niloticus	ENSONIG00000012248	1 retrocopy	retro_onil_38,