RetrogeneDB ID: retro_mluc_1515

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429853:1477961..1480005(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025876
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000132
• Aliases: None
• Description: None

Sequence

>retro_mluc_1515
ACCCCAGCGGTTCCAGGCGACCTGCAGCTTCCCCCAAGTCAGAGGGGCCCAGTTCGCCTTCAGAGAGCAAAGAAAATAAA
AACTCAAGGAGCATCTGTTAAAAAGAAAAACTCTTTTTGCATACAAATAGGAAAATAAGAAATTCTCCAGTAGAAACGAG
GGAATGATGACATCTGAGGGTCTGGTCCAAGAAGAGACAAAAGTTCTGAAACTTAAGACAAAAATGGCTGATAAAGAAAA
TGTCCATAGACCTACAAGGAGCAAAAATAATGTAACAATGGGAAACAATTGTATTCCGTTAAAACCTTCTAATGAATTAA
CCAATTCAACTATAGCCACTGATACATGTAACTTGGAGAATAATCATCAAACTCTGCAGTTGTTACTAATTACAAATGAT
CACCAAGGTCAACATATGACATTAAGCCAAACGTTTCACATTAAAAACAATAATAAAAAGAAACAAGTGACTACAGAAAA
ACCAAAGGAAGATGCTAACGTGCTCAAGAAACCTGTGCTTGGATCTTATCGTGGCCAAATTGTTCAATCTAAGGTTAATT
CATTTAGAAAACCTATACAAGTCAAAGATGAGCATTCTGCAATAACAAAGAAACTTTCAACTCCTATCTCTAAGGCCACA
AAACCTCAGCCTATAAACACCAGCAGTGTAACAGCAAAAAGTCACAGAGCCTCAAATATGACGACGACGACTAAATTTGT
GAGGGCTACATCTCAGAATGAACAACTTTTACGTCCTCCTATTAGAAGTCACCACAGTAATACTCATAATACCCAGGACT
CCCTGAAACAAGGCGTTGCCAATGTTACAGTTCGGAAAGGGTCTCATGAGAAAGAATTACTGCAATTAAATACAGTTTTA
TCTAGTGTCAAAACCATTTCTTCTCAGGAAGTAAAAAGAAATAAGACAGTATCGAGAAGCATCACATCTGAAATGATAGC
CAGGCCTGCTTCATCTTCTAATATCAAACAGATAGGAAAGTCAAAAACCATTGAACAGTGCAGGCATACTATAGCAAAAG
CAACTATCAATAGAAGGGCTCAGCCCAGGGAAACCGTAGAAGAAAGAAAAGCTCGTCTGAGTGAGTGGAGAGCTAGCAAA
GGAAAAATGTTGAAAAGGCCTCCTAGCTCAGTAATAACCCAGCCTAAACCTGAAGGACAGAATGAAAAACCAGTTGGGTC
ATTTTGGACTACCATGGCAGAAGAAGATGAACAAAGATTACTTACTGAAAAAGTAAACAAGACATTTTCTGAATGCCTAA
ACCTGATTAATGAGGGATGCCCCAAAGAAGAAGTATTCAACATACTGAGTGACCTGATTAAAAATATTCCAGATGCCAAA
AAACTTGTTAAGTATTGGATATGCCTTGCACGTCTTGAACCACTCACAAGTTCTATCGAAAATATTATCTCAATCTTTGA
GAAGGCCATTCTGGCAGGAGCTCAGCCTATTGAAGAATTGCGACATGCAATTGCAGATATTCTAACAATGAAGAGTCAAG
AAAAAGTTAAATTTGGAGAAAATCCTGAGGAGGCTTGTGCAACCAAGGAAAAAATCCAGGAAGTCAACACTGAAGATATT
GGTGTTAATCTAGAGTCAGGAAAACCTGAAATGGAAAATAAACATCATAGAAATGTGGTATTTCAAGATTGTAAAAAAGA
GCAAGTACACAAAACAAAAGATCCAACCAATGATGTTAAAACCCCCAACAAAGAAACTAGGGAGGATTGCTTAATTAAAT
ATATTGTGTCTACTACACCATACTTGCAAAGTGTAAAAAAGAAAATGCAGTTTGACGAAATAAATTCTACATCTAAAAAG
CTCAAATTTCTAACACCAGTTAGACGTTCTCAGCGACTTCAAAACAAAACTTCTAAATTGCCTGATATGTTAAAAGACCA
TTATCCTTGTGTGTCTTCATTGGAACAGTTAACAGAGTTGGAGGATAAAACTGATGCTTTTATATGCTGCCCTAATGCAG
CACTGTGCCGGATGTATTTGGAGACTGAAACAACAGAAGACAAA

Alignment

ORF - retro_mluc_1515 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.54 %
• Parental protein coverage: 97.71 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SPAVPGDLQLPLSQR-AQVSFREQRKQKLKEHLLKRKTLFAYKQENQKFSSSRNEGMMTSEGLVQEETKV
          .PAVPGDLQLP.SQR.AQ..FREQRK.KLKEHLLKRKTLFAYK.EN.KFSS.RNEGMMTSEGLVQEETKV
Retrocopy TPAVPGDLQLPPSQR>AQFAFREQRK*KLKEHLLKRKTLFAYK*ENKKFSS-RNEGMMTSEGLVQEETKV

Parental  LKLKTEMADKENVHRPTRSKNNVTMGKNCIPLKPSNELTNSTIATDTYNLENNNQTLQLLPITNDHQGQR
          LKLKT.MADKENVHRPTRSKNNVTMG.NCIPLKPSNELTNSTIATDT.NLENN.QTLQLL.ITNDHQGQ.
Retrocopy LKLKTKMADKENVHRPTRSKNNVTMGNNCIPLKPSNELTNSTIATDTCNLENNHQTLQLLLITNDHQGQH

Parental  MTLSQAFHIKNNNKKKQVTTEKPKQDANVLKKPVLGSYRGQIVQSKVNSFRKPVQAKDEHSAITKKLSTP
          MTLSQ.FHIKNNNKKKQVTTEKPK.DANVLKKPVLGSYRGQIVQSKVNSFRKP.Q.KDEHSAITKKLSTP
Retrocopy MTLSQTFHIKNNNKKKQVTTEKPKEDANVLKKPVLGSYRGQIVQSKVNSFRKPIQVKDEHSAITKKLSTP

Parental  ISKATKPQPINTSSVTAKSHRASNMMTTTKFVRATSQNGQLLRPPIRSHHSNTHNTQDSLKKGIANVTVR
          ISKATKPQPINTSSVTAKSHRASNM.TTTKFVRATSQN.QLLRPPIRSHHSNTHNTQDSLK.G.ANVTVR
Retrocopy ISKATKPQPINTSSVTAKSHRASNMTTTTKFVRATSQNEQLLRPPIRSHHSNTHNTQDSLKQGVANVTVR

Parental  KGSHEKELLQLNTVLSSVKTISSQEVKRNKTVSRSITSEMIARPASSSNIKQIEKSKTIDPCRHTIAKAT
          KGSHEKELLQLNTVLSSVKTISSQEVKRNKTVSRSITSEMIARPASSSNIKQI.KSKTI..CRHTIAKAT
Retrocopy KGSHEKELLQLNTVLSSVKTISSQEVKRNKTVSRSITSEMIARPASSSNIKQIGKSKTIEQCRHTIAKAT

Parental  INNRRAQPKETVEERKARLSEWRASKGKILKRPPSSVITQPEPEGQNEKPVGSFWTTMAEEDEQRLFTEK
          IN.RRAQP.ETVEERKARLSEWRASKGK.LKRPPSSVITQP.PEGQNEKPVGSFWTTMAEEDEQRL.TEK
Retrocopy IN-RRAQPRETVEERKARLSEWRASKGKMLKRPPSSVITQPKPEGQNEKPVGSFWTTMAEEDEQRLLTEK

Parental  VNKTFSECLNLINEGCPKEEVLNTLNDLIKNIPDAKKLVKYWICLARVEPLTSSIENIISIFEQAILAGA
          VNKTFSECLNLINEGCPKEEV.N.L.DLIKNIPDAKKLVKYWICLAR.EPLTSSIENIISIFE.AILAGA
Retrocopy VNKTFSECLNLINEGCPKEEVFNILSDLIKNIPDAKKLVKYWICLARLEPLTSSIENIISIFEKAILAGA

Parental  QPIEEMRHAIADILTMKSQEKVKFGENLEEACATKEKIQEVNIEDIGVNRESGKPEMENKHHRNVVFQDC
          QPIEE.RHAIADILTMKSQEKVKFGEN.EEACATKEKIQEVN.EDIGVN.ESGKPEMENKHHRNVVFQDC
Retrocopy QPIEELRHAIADILTMKSQEKVKFGENPEEACATKEKIQEVNTEDIGVNLESGKPEMENKHHRNVVFQDC

Parental  KKEQVHKTKDPTNDVKTPNTETREGCLIKYNVSTTPYLQSVKKKMQFDEINSAFKELKFLTPVRRSQRLQ
          KKEQVHKTKDPTNDVKTPN.ETRE.CLIKY.VSTTPYLQSVKKKMQFDEINS..K.LKFLTPVRRSQRLQ
Retrocopy KKEQVHKTKDPTNDVKTPNKETREDCLIKYIVSTTPYLQSVKKKMQFDEINSTSKKLKFLTPVRRSQRLQ

Parental  DKTSKLPDMLKDHYPCVSSLEQLTELGDETDAFICRPNAALCRMYLETETTEEK
          .KTSKLPDMLKDHYPCVSSLEQLTEL.D.TDAFIC.PNAALCRMYLETETTE.K
Retrocopy NKTSKLPDMLKDHYPCVSSLEQLTELEDKTDAFICCPNAALCRMYLETETTEDK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1515 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000005898	1 retrocopy	retro_cfam_968,
Choloepus hoffmanni	ENSCHOG00000009905	2 retrocopies	retro_chof_1493, retro_chof_973,
Cavia porcellus	ENSCPOG00000012382	1 retrocopy	retro_cpor_171,
Felis catus	ENSFCAG00000010021	1 retrocopy	retro_fcat_1770,
Myotis lucifugus	ENSMLUG00000000132	1 retrocopy	retro_mluc_1515 ,
Monodelphis domestica	ENSMODG00000010436	1 retrocopy	retro_mdom_1364,
Mustela putorius furo	ENSMPUG00000017996	1 retrocopy	retro_mputfur_1270,
Mus musculus	ENSMUSG00000037725	1 retrocopy	retro_mmus_2651,
Otolemur garnettii	ENSOGAG00000008428	1 retrocopy	retro_ogar_1743,
Tupaia belangeri	ENSTBEG00000005807	1 retrocopy	retro_tbel_176,
Tursiops truncatus	ENSTTRG00000009624	2 retrocopies	retro_ttru_1491, retro_ttru_1741,