RetrogeneDB ID: retro_meug_39

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold1013:50345..51191(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000007833
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000016519
• Aliases: None
• Description: None

Sequence

>retro_meug_39
GAATCGGGATTGGGAAAATCTACTCTCATCAATAGCCTGTTCTTGACTGACTTATACCCAGAAAGGGTCATTCCTGGGGC
AGCAGAGAAAATAGAAACGACGGTGCAGATTGAGGCATCCACCGCGGAGATTGAGGAGAGAGGAGTCAAGCTCCATCTTA
CTGTGGTCGACACCCCAGGCTACGGGGACGCCCTTAACTGCCGGGACTGCTTCAAGACGATCATCTCCTACATCGATGAG
CAATTTGAACGGTATCTACATGAGGAAAGTGACTTAAGCCAAGGCCACATCATAGACAAGCGCGTGCATTGCTGCTTCTA
CTTTATCTCACCTTTTGGACATGGACTTAAACCTTTAGATGTAGAGTTTATGAAAGCCATACACAATAAAGTGAATATTG
TGCCTGTGATAGCAAAAGCTGATACTCTGACCCTGAAGGAACGGGAACGACTGAAGAAGCGGGTTCTGGATGAAATTGAA
AAGCACGGCATCAAGATTTATCATTTACCTGACGCAGAGTCAGATGAGGATGAGGATTATAAGGAACAGACTAGACTTCT
GAAGGCCAGTATTCCATTTTCAGTAGTAGGATCCAACCAGTTGATTGAAGCCAAAGGCAAAAAGTTTAGAGGTCGTCTCT
ACCCTTGGGGAGTTGTGGAAGTGGAGAATACCGAACATAATGACTTTCTAAAGCTGCGAACGATGCTGATTACACACATT
CAGGATCTCCAGGAGGTGACCCAGGACCTTCACTATGAGAACTTTCTCTCTGAAAGGCTGAAGAGAGGGAGCATGAAAGT
GGAAAATGAGGAAGTGAATCGAGACCAGATCCTGATGGAAAAGGAA

Alignment

ORF - retro_meug_39 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.98 %
• Parental protein coverage: 68.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC
          ESGLGKSTLINSLFLTDLYPERVIPGAAEKIE.TVQIEAST.EIEERGVKL.LTVVDTPGYGDA.NCRDC
Retrocopy ESGLGKSTLINSLFLTDLYPERVIPGAAEKIETTVQIEASTAEIEERGVKLHLTVVDTPGYGDALNCRDC

Parental  FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVEFMKAIHNKVNIVPVIAKA
          FKTIISYIDEQFERYLH.ES.L...HIID.RVHCCFYFISPFGHGLKPLDVEFMKAIHNKVNIVPVIAKA
Retrocopy FKTIISYIDEQFERYLHEESDLSQGHIIDKRVHCCFYFISPFGHGLKPLDVEFMKAIHNKVNIVPVIAKA

Parental  DTLTLKERERLKKRVLDEIEEHGIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVR
          DTLTLKERERLKKRVLDEIE.HGIKIYHLPDAESDEDED.KEQTRLLKASIPFSVVGSNQLIEAKGKK.R
Retrocopy DTLTLKERERLKKRVLDEIEKHGIKIYHLPDAESDEDEDYKEQTRLLKASIPFSVVGSNQLIEAKGKKFR

Parental  GRLYPW
          GRLYPW
Retrocopy GRLYPW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_39 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_39 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 18 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002608	1 retrocopy	retro_btau_1185,
Canis familiaris	ENSCAFG00000012960	1 retrocopy	retro_cfam_1477,
Choloepus hoffmanni	ENSCHOG00000008715	5 retrocopies	retro_chof_1371, retro_chof_1579, retro_chof_2198, retro_chof_275, retro_chof_614,
Callithrix jacchus	ENSCJAG00000006122	1 retrocopy	retro_cjac_1501,
Cavia porcellus	ENSCPOG00000013687	1 retrocopy	retro_cpor_845,
Loxodonta africana	ENSLAFG00000011964	1 retrocopy	retro_lafr_4,
Macropus eugenii	ENSMEUG00000006112	1 retrocopy	retro_meug_1193,
Macropus eugenii	ENSMEUG00000015556	3 retrocopies	retro_meug_1227, retro_meug_1847, retro_meug_227,
Macropus eugenii	ENSMEUG00000016519	1 retrocopy	retro_meug_39 ,
Myotis lucifugus	ENSMLUG00000007108	1 retrocopy	retro_mluc_1594,
Monodelphis domestica	ENSMODG00000016041	1 retrocopy	retro_mdom_888,
Mustela putorius furo	ENSMPUG00000000166	1 retrocopy	retro_mputfur_436,
Nomascus leucogenys	ENSNLEG00000013873	1 retrocopy	retro_nleu_1848,
Otolemur garnettii	ENSOGAG00000004457	1 retrocopy	retro_ogar_2239,
Pteropus vampyrus	ENSPVAG00000000558	1 retrocopy	retro_pvam_448,
Rattus norvegicus	ENSRNOG00000017952	1 retrocopy	retro_rnor_1110,
Ictidomys tridecemlineatus	ENSSTOG00000013357	1 retrocopy	retro_itri_1227,
Drosophila melanogaster	FBgn0011710	1 retrocopy	retro_dmel_35,