RetrogeneDB ID: retro_meug_1193

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold322618:365..1150(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEPT6
• Ensembl ID: ENSMEUG00000006112
• Aliases: None
• Description: septin 6 [Source:HGNC Symbol;Acc:15848]

Sequence

>retro_meug_1193
TATCAACTAATAGTTGATTACATAGATGCTCAATTTGAGACGTATCTCCAAGAACAATTGAAGATAACAAGGTCTCTCTT
TAATTACCATGATTCTCGCATCCATGTCTGCCTTTACTTTATTTCACCTACGGGACATTCCCTTAAGACACTTGATTTGT
TAACCATGAAGAGTCTTGATAGTAAGGTAAATATCATCCCTGTGATTGCCAAAGCAGATACAATTTCTAAAACTGAATTA
CAGAAGTTTAAGATCAAACTGATGAGTGAATTGGTCAGCAATGGAGTACAGATATACCAGTTCCCAACAGATAATGAAGC
TATTTCTCAAATTAACTGTGCAATGAATGGACATTTGCCATTTGCTGTTGTGGGCAGTATGGAAGAGGTCAAACTTGGAA
ACAAGAAGTGAAAGCTCGTCAGTACCCGTGGGGCATTGTTCAATTGGAAAATGAAAATCACTGTGACTTCATAAAGCTCT
GTGAAATGCTTATTTGCACAAATATGGAAGACCTGAGAGAACAAATCCATACTCAACATTATGAACTTTATATGTGATGC
AAACTGGAGGAAATGAGTTTTAAAGATGTAAGCCCAGAGAACAAACCAGTCAGTCTTCAGGAGGCCTATGAAATCAAAAG
ACATGAATTTTACGGTGAACGTCAAAGGAAAGAAGAGGAGATGAAACAGATGTTTGTGCAGCAGGTGAAGGAGAAAGAAG
CAATCTTGAAAGAAGCTGAGAGAGAGCTGCAGGCCAAATTTGAACATCTCAAAAGACTTCATCAG

Alignment

ORF - retro_meug_1193 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.14 %
• Parental protein coverage: 57.21 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YKPIVEFIDAQFEAYLQEELKIRRVLHSYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIA
          Y..IV..IDAQFE.YLQE.LKI.R.L..YHDSRIHVCLYFI.PTGHSLK.LDL.TMK.LDSKVNIIP.IA
Retrocopy YQLIVDYIDAQFETYLQEQLKITRSLFNYHDSRIHVCLYFISPTGHSLKTLDLLTMKSLDSKVNIIPVIA

Parental  KSDAIAKSELTKFKIKITSELVSNGVQIYQFPTDDESVAELNGTMNGHLPFAVVGSTEELKIGNKM-VKA
          K.D.I.K.EL.KFKIK..SELVSNGVQIYQFPTD.E.....N..MNGHLPFAVVGS.EE.K.GNK..VKA
Retrocopy KADTISKTELQKFKIKLMSELVSNGVQIYQFPTDNEAISQINCAMNGHLPFAVVGSMEEVKLGNKK<VKA

Parental  RQYPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHSRHYELYRRCKLEEMGFQDTDPDNKPFSLQET
          RQYPWG.VQ.ENE.HCDF.KL.EMLI..NMEDLREQ.H..HYELY..CKLEEM.F.D..P.NKP.SLQE.
Retrocopy RQYPWGIVQLENENHCDFIKLCEMLICTNMEDLREQIHTQHYELYM*CKLEEMSFKDVSPENKPVSLQEA

Parental  YEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKIHQ
          YE.KR.EF.GE.QRKEEEM.QMFVQ.VKEKEA.LKEAE.EL..KF..LK..HQ
Retrocopy YEIKRHEFYGERQRKEEEMKQMFVQQVKEKEAILKEAERELQAKFEHLKRLHQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1193 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1193 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004291	1 retrocopy	retro_btau_627,
Macropus eugenii	ENSMEUG00000006112	1 retrocopy	retro_meug_1193 ,
Macropus eugenii	ENSMEUG00000015556	3 retrocopies	retro_meug_1227, retro_meug_1847, retro_meug_227,
Macropus eugenii	ENSMEUG00000016519	1 retrocopy	retro_meug_39,
Microcebus murinus	ENSMICG00000002769	1 retrocopy	retro_mmur_1065,