RetrogeneDB ID: retro_ggor_32

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 21:24582126..24582486(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000027931
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: RPS9
• Ensembl ID: ENSGGOG00000027839
• Aliases: None
• Description: None

Sequence

>retro_ggor_32
ATGCCAGCGGCCCAGAGCTGGGTTTGTCGCCAAACTTATGTGACCCCGCAGAGACCCTTCGAGAAAACTCATCTTGACCA
AAAGCTAAAGCTGATTGGTGAGTATGGGTTCCAGAACAAATGTGAGGTCTGGAGGGTCAAATTTACCCTGGTCAAGATCC
ATAAGGCCGCCCGGGAGCTGCTGACGCTTGATGAGAAGGACCCACGGCATCTGTTCGAAGGCATTGCCCTGCTGCAGTGG
CTGGTCCACACTGGGGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTGAAGATCAATGATTTCTTAGA
GATGCCTACAGACCCAGGTCTTCAAGCTTGGCTTGGCTAA

Alignment

ORF - retro_ggor_32 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.24 %
• Parental protein coverage: 55.15 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR
          MP.A.SWVCR.TYVTP.RPFEK..LDQ.LKLIGEYG..NK.EVWRVKFTL.KI.KAARELLTLDEKDPR.
Retrocopy MPAAQSWVCRQTYVTPQRPFEKTHLDQKLKLIGEYGFQNKCEVWRVKFTLVKIHKAARELLTLDEKDPRH

Parental  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLE
          LFEG.ALL..LV..GVLDEGKMKLDYILGLKI.DFLE
Retrocopy LFEGIALLQWLVHTGVLDEGKMKLDYILGLKINDFLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.29 RPM	152.97 RPM
SRP007412_cerebellum	0.16 RPM	163.07 RPM
SRP007412_heart	0.13 RPM	172.27 RPM
SRP007412_kidney	0.33 RPM	228.90 RPM
SRP007412_liver	0.05 RPM	364.65 RPM
SRP007412_testis	0.00 RPM	162.96 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_32 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_32 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pongo abelii	retro_pabe_1845
Macaca mulatta	retro_mmul_1664

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001130	3 retrocopies	retro_cjac_2034, retro_cjac_2993, retro_cjac_719,
Cavia porcellus	ENSCPOG00000020893	2 retrocopies	retro_cpor_1457, retro_cpor_407,
Gorilla gorilla	ENSGGOG00000027839	4 retrocopies	retro_ggor_1491, retro_ggor_160, retro_ggor_2190, retro_ggor_32 ,
Mustela putorius furo	ENSMPUG00000010394	1 retrocopy	retro_mputfur_128,
Mus musculus	ENSMUSG00000006333	2 retrocopies	retro_mmus_3082, retro_mmus_526,
Nomascus leucogenys	ENSNLEG00000006314	1 retrocopy	retro_nleu_91,
Pan troglodytes	ENSPTRG00000011449	1 retrocopy	retro_ptro_57,
Rattus norvegicus	ENSRNOG00000011355	7 retrocopies	retro_rnor_1298, retro_rnor_2577, retro_rnor_2849, retro_rnor_2902, retro_rnor_635, retro_rnor_663, retro_rnor_892,
Rattus norvegicus	ENSRNOG00000049813	3 retrocopies	retro_rnor_2082, retro_rnor_30, retro_rnor_78,