Parental gene:

RPS9, ENSCPOG00000020893

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_70:2857525..2859721(-)


>ENSCPOG00000020893
ATGCCGGTGGCAAGAAGCTGGGTTTGTCGCAAAACCTACGTGACCCCTCGGAGGCCCTTCGAGAAATCCCGCCTTGACCA
AGAACTGAAGCTGATCGGCGAATACGGTTTGCGGAACAAGCGCGAGGTCTGGAGGGTCAAGTTTACTCTGGCCAAGATCC
GCAAGGCCGCCCGGGAGCTGCTGACGCTGGACGAAAAGGACCCGCGGCGTCTCTTCGAAGGCAACGCTCTCCTGCGACGA
CTTGTCCGCATTGGTGTGCTGGATGAGGGCAAGATGAAGCTGGATTACATCCTGGGCCTCAAAATCGAGGACTTCCTGGA
GAGGCGCCTGCAGACCCAGGTCTTCAAGCTGGGTCTGGCCAAGTCTATCCACCACGCCCGTGTGCTCATCCGCCAGCGCC
ACATCAGGGTCCGCAAGCAGGTGGTGAACATCCCGTCCTTCATCGTGCGCCTGGACTCCCAGAAGCACATCGACTTCTCT
CTGCGCTCCCCATATGGGGGAGGCCGCCCGGGCCGTGTGAAGAGGAAAAATGCCAAAAAGGGTCAGGGTGGTGCTGGGGC
TGGCGATGACGAGGAGGAGGAT

Library Parental gene expression (RPM)
SRP017611_brain 56 .37 RPM
SRP017611_kidney 108 .67 RPM
SRP017611_liver 88 .40 RPM
SRP040447_lung 165 .52 RPM
SRP040447_skeletal_muscle 189 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001130 ortholog_one2one 3 retrogenes
retro_cjac_2034, retro_cjac_2993, retro_cjac_719,
Gorilla gorilla ENSGGOG00000027839 possible_ortholog 4 retrogenes
retro_ggor_1491, retro_ggor_160, retro_ggor_2190, retro_ggor_32,
Mustela putorius furo ENSMPUG00000010394 ortholog_one2one 1 retrogene
retro_mputfur_128,
Nomascus leucogenys ENSNLEG00000006314 possible_ortholog 1 retrogene
retro_nleu_91,
Pan troglodytes ENSPTRG00000011449 possible_ortholog 1 retrogene
retro_ptro_57,
Rattus norvegicus ENSRNOG00000011355 ortholog_one2one 7 retrogenes
retro_rnor_1298, retro_rnor_2577, retro_rnor_2849, retro_rnor_2902, retro_rnor_635, retro_rnor_663, retro_rnor_892,
Rattus norvegicus ENSRNOG00000049813 possible_ortholog 3 retrogenes
retro_rnor_2082, retro_rnor_30, retro_rnor_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_407 71.00 100.00
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2. retro_cpor_1457 63.27 98.97
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Download FASTA sequences of all ENSCPOG00000020893 retrocopies