RetrogeneDB ID: | retro_ggor_1122 | ||
Retrocopy location | Organism: | Gorilla (Gorilla gorilla) | |
| Coordinates: | 14:83181813..83182278(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | AKTIP | ||
| Ensembl ID: | ENSGGOG00000014821 | ||
| Aliases: | None | ||
| Description: | AKT interacting protein [Source:HGNC Symbol;Acc:16710] |
Retrocopy-Parental alignment summary:
>retro_ggor_1122
CCGCAAAGCACTTTACCCAGCATGGAGGCTCCACCTCTTGCCACAGCAGCACAGACAGCTAATGGCATACCTGCTTCCAG
AAGACCCTTCTACCTGGAGGATCTTCTTGTGGCATCTACCTCCATCATGAAGCAGAAGTCATCTGGCACCTGTGTGCAGT
CATCTTATCGCTCTGCATTTGTGTAGGTTGGAACAGTTTCATTCAGCGTGGACTTTATCAAGACTGTGCATTTAGGCCTA
CGGTTCATATCCCTGATAACTATCTGGGTGGTGCCTGTCCACACTTGGTATTTGACGTTCCTCCCTTTCACATCCTCATT
AATTCCATCTCTGTGAACTGGATGTGCAGAGAGATTTGCAAAGTAGAGGCGGAACCATAATTGCACTTGGGAAGTACCCA
TCAGTACAAGGAAACATTTCTTCAAGATTGATACAGCAAACCCCCTAAACCCAGAGGCTACTGTA
ORF - retro_ggor_1122 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 54.38 % |
| Parental protein coverage: | 53.58 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | PKNALPITKPTSPAPAAQSTNGTHASYGPFYLEYSLLAEFTLVVKQKLPGVYVQPSYRSALMWFGVI-FI |
| P...LP.......A.AAQ..NG..AS..PFYLE..LL...T...KQK..G..VQ.SYRSA....G...FI | |
| Retrocopy | PQSTLPSMEAPPLATAAQTANGIPASRRPFYLE-DLLVASTSIMKQKSSGTCVQSSYRSAFV*VGTV<FI |
| Parental | RHGLYQDGVFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTS-GELDVKR-AFAKWRRNHNHIWQVLMY |
| ..GLYQD..F..TV.IPDNY..G.CP.LVFD.P.FH.L....S..ELDV.R..FAK.RRNHN..W.V... | |
| Retrocopy | QRGLYQDCAFRPTVHIPDNYLGGACPHLVFDVPPFHILINSIS<CELDVQR<RFAK*RRNHNCTWEVPIS |
| Parental | ARRVFYKIDTASPLNPEAAV |
| .R..F.KIDTA.PLNPEA.V | |
| Retrocopy | TRKHFFKIDTANPLNPEATV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 53 .71 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 25 .45 RPM |
| SRP007412_heart | 0 .00 RPM | 7 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 32 .18 RPM |
| SRP007412_liver | 0 .00 RPM | 11 .00 RPM |
| SRP007412_testis | 0 .00 RPM | 45 .17 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1122 was not experimentally validated.