Parental gene:

AKTIP, ENSCPOG00000006523

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_5:11482996..11489574(-)


>ENSCPOG00000006523
ATGAACCCTTTCTGGAGCATGTCTACAAGCTCTGTACGCAAACGTTCTGATGGTGAAGAGAAGACATTAGCAGGGGATGT
GAAAACCAGTCCTCCACGAACTGCACCAAAAAAACAGCTGCCTTCTATTCCCAAAAATGCTTTACCCATAACTAAGCCTG
CATCTCCTGCCCCAGCAGCACAGTCAACAAACGGCACACACGCTTCTTATGGGCCCTTCTACCTGGAGTACTCTCTGCTC
GCAGAATTTACCTTGGTTGTGAAGCAGAAGTTACCAGGAGTCTATGTCCAGCCATCTTATCGCTCTGCATTAATGTGGTT
TGGAGTAATATTCATACGGCATGGGCTTTATCAAGATGGTGTGTTCAAGTTTACAGTTTATATCCCTGATAACTATCCAG
ATGGTGACTGTCCACGCTTGGTGTTTGATATTCCCGTCTTTCACCCGCTAGTTGATCCCACCTCAGGTGAACTGGATGTG
AAGAGAGCATTTGCAAAATGGAGGCGGAACCATAATCATATTTGGCAAGTGTTAATGTATGCAAGGCGAGTTTTCTACAA
GATTGATACAGCAAGCCCCTTAAATCCAGAGGCTGCAGTACTGTATGAAAAAGATGTTCACCTTTTTAAAAGCAAAGTGG
TCGACAGTGTTAAAGTGTGCACTTCTCGTTTGTTTGAACAACCTAAAATAGAAGACCCTTATGCAATTAGCTTTTCTCCA
TGGAATCCTTCTGTACACGATGAAGCCAGAGAGAAGATGCTGACTCAGAAAAAGCCTGAAGAACAGCACAAAAGTGTTCA
TGTGGCTGGTCTGTCATGGGTAAAGCCTGGCTCAGTACAACCTTTCAGTAAAGAAGAAAAAACAGTAGCAACTTAA

Library Parental gene expression (RPM)
SRP017611_brain 37 .90 RPM
SRP017611_kidney 25 .44 RPM
SRP017611_liver 11 .75 RPM
SRP040447_lung 16 .22 RPM
SRP040447_skeletal_muscle 15 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016345 ortholog_one2one 1 retrogene
retro_amel_392,
Canis familiaris ENSCAFG00000009500 ortholog_one2one 1 retrogene
retro_cfam_1826,
Choloepus hoffmanni ENSCHOG00000013690 ortholog_one2one 2 retrogenes
retro_chof_2533, retro_chof_629,
Callithrix jacchus ENSCJAG00000001498 ortholog_one2one 1 retrogene
retro_cjac_2895,
Dasypus novemcinctus ENSDNOG00000004906 ortholog_one2one 4 retrogenes
retro_dnov_1376, retro_dnov_1776, retro_dnov_2080, retro_dnov_756,
Equus caballus ENSECAG00000020381 ortholog_one2one 1 retrogene
retro_ecab_504,
Homo sapiens ENSG00000166971 ortholog_one2one 2 retrogenes
retro_hsap_1458, retro_hsap_3152,
Gorilla gorilla ENSGGOG00000014821 ortholog_one2many 1 retrogene
retro_ggor_1122,
Microcebus murinus ENSMICG00000010810 ortholog_one2one 3 retrogenes
retro_mmur_124, retro_mmur_333, retro_mmur_985,
Microcebus murinus ENSMICG00000016793 possible_ortholog 1 retrogene
retro_mmur_1191,
Monodelphis domestica ENSMODG00000025788 ortholog_one2one 1 retrogene
retro_mdom_1881,
Nomascus leucogenys ENSNLEG00000001106 ortholog_one2one 1 retrogene
retro_nleu_2660,
Otolemur garnettii ENSOGAG00000014495 ortholog_one2one 1 retrogene
retro_ogar_365,
Oryzias latipes ENSORLG00000013747 ortholog_one2one 1 retrogene
retro_olat_30,
Pongo abelii ENSPPYG00000007351 ortholog_one2one 2 retrogenes
retro_pabe_1204, retro_pabe_1205,
Pan troglodytes ENSPTRG00000008116 ortholog_one2one 1 retrogene
retro_ptro_2282,
Rattus norvegicus ENSRNOG00000011956 ortholog_one2one 1 retrogene
retro_rnor_1611,
Tupaia belangeri ENSTBEG00000017105 ortholog_one2one 5 retrogenes
retro_tbel_1063, retro_tbel_2864, retro_tbel_3350, retro_tbel_4130, retro_tbel_853,
Tursiops truncatus ENSTTRG00000012705 ortholog_one2one 1 retrogene
retro_ttru_348,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_622 76.04 65.29
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Download FASTA sequences of all ENSCPOG00000006523 retrocopies