RetrogeneDB ID: retro_etel_30

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_5541:35276..36230(+)
• Located in intron of: ENSETEG00000001218

Retrocopy information

• Ensembl ID: ENSETEG00000001225
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ENO2
• Ensembl ID: ENSETEG00000007582
• Aliases: None
• Description: enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353]

Sequence

>retro_etel_30
ATGTCTTTCCTCAAGATTCACGCCAGAAAGATCTTCAACTCCCGTGGAAATCCCACCGTTGAGGTCGATTTTTACACTGC
CAAAGGGCTCTTCAGAGCTGCTGTGCCCAGTGGTGCCTCCACTGGGATCTGTGAGGCCCTGGAGCTCCGGGACAATGATA
AGACCCGGTATCTGGGCAAAGGGGTCTCCAAGGCTGTGGGGCACATCAATACAACGATTGCGCCTGCCCTGGTTAGCAAG
AAGGTGAACGTGACGGAACAGGAAAAGATCGACAAGCTGATGATTGAGATGGATGGAACTGAGAATAAATCAAAATTTGG
TGCAAATGCCATTCTGGGCATGTCCCTTGCTGTGTGCAAGGCCGGAGCTGTTGAGAAGGGAGTCCCCCTATACTGTCACA
TGGCTGACTTGGCCGGCAATTCTGAAGTTATCCTGCCAGTTCCTGCTTTCAATGTGATCAACAGCGGCTCCCATGCTGGC
AACAAGCTGGCCATGCAGGAGGTCATGATCCTCCCCATCGGAGCAGCCAACTTCAAGGAGGCCATGTGCTTCAGGGCCGA
GGTGTACTACAACCTGAAGAACGTCATCAAGGAGAAGTACGGCAAGGATGCCACCAATGTCGGGGATGAAGGCGGATTTG
CCCCCAACATCTTGGAGAACAAAGAAGCCCTGGAGCTGCTGAAGAATGCTATTGGGAAAGCTGGTTACACGGACAAGGTG
GTGATTGGCATGGACGTAGCTGCCTCCGAGTTCTTCAGGTCTGGGAAATACGACCTAGACTTCAAGTCTCCTGATGACCC
CAGCAGGTACATCTCACCTAACCAACTGGCAGACCTGTACAAGTCCTTCATCACGGACTACCCAGTAGTGTCTGTCGAAG
ACCCCTTTGACCAGAATGACTGGGACGCTTGGGCCAAGTTCACTGCCAGTTCAGGGATCCAGGTGGTAGGGGAT

Alignment

ORF - retro_etel_30 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.1 %
• Parental protein coverage: 73.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSIEKIWAREILDSRGNPTVEVDLSTAKGLFRAAVPSGASTGIYEALELGDGDKQRYLGQGVLKAVDHIN
          MS..KI.AR.I..SRGNPTVEVD..TAKGLFRAAVPSGASTGI.EALEL.D.DK.RYLG.GV.KAV.HIN
Retrocopy MSFLKIHARKIFNSRGNPTVEVDFYTAKGLFRAAVPSGASTGICEALELRDNDKTRYLGKGVSKAVGHIN

Parental  STIAPALVSSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERDLPLYRHIAQLAGN
          .TIAPALVS....V.EQEK.D.LM.E.DGTENKSKFGANAILG.SLAVCKAGA.E...PLY.H.A.LAGN
Retrocopy TTIAPALVSKKVNVTEQEKIDKLMIEMDGTENKSKFGANAILGMSLAVCKAGAVEKGVPLYCHMADLAGN

Parental  SDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDE
          S..ILPVPAFNVIN.GSHAGNKLAMQE.MILP.GA..F..AM...AEVY..LK.VIK.KYGKDATNVGDE
Retrocopy SEVILPVPAFNVINSGSHAGNKLAMQEVMILPIGAANFKEAMCFRAEVYYNLKNVIKEKYGKDATNVGDE

Parental  GGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPPDPSRCITGDQLGSLY
          GGFAPNILEN.EALEL.K.AI.KAGYT.K.VIGMDVAASEF.R.GKYDLDFKSP.DPSR.I...QL..LY
Retrocopy GGFAPNILENKEALELLKNAIGKAGYTDKVVIGMDVAASEFFRSGKYDLDFKSPDDPSRYISPNQLADLY

Parental  QDFVRNYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGD
          ..F...YPVVS.EDPFDQ.DW.AW.KFTA..GIQ.VGD
Retrocopy KSFITDYPVVSVEDPFDQNDWDAWAKFTASSGIQVVGD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_30 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014523	1 retrocopy	retro_cfam_320,
Echinops telfairi	ENSETEG00000007582	8 retrocopies	retro_etel_1077, retro_etel_1696, retro_etel_1837, retro_etel_2120, retro_etel_227, retro_etel_286, retro_etel_30 , retro_etel_544,
Felis catus	ENSFCAG00000004282	1 retrocopy	retro_fcat_1423,
Microcebus murinus	ENSMICG00000001774	1 retrocopy	retro_mmur_362,