RetrogeneDB ID: retro_etel_1837

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_305383:2494..3546(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000009432
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENO2
• Ensembl ID: ENSETEG00000007582
• Aliases: None
• Description: enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353]

Sequence

>retro_etel_1837
GTGGACGTGACGGAACAGGAAAAGATCGACAAGCTGATGATTGAGATGGATGGAACTGAGAATAAATCAAAATTTGGTGC
AAATGCCATTCTGGGCGTGTCCCTCGCTGTGTGCAAGGCCCGGAGCTGTTGAGTAGGGAGTCCCCCTATACCGTCACATT
GCTGACTTAGCTGGCAATTCCCGAAGTTATCCTGCCAGTTGCTGCTTTCAATGTGATCAACGGCGGCTCCCATGCCGGCA
ACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCCGTCGGGGCAGCCAACTTCAAGGAGGCCATGCGCATCGGGGCCGAG
GTATACCACAACCTGAAGAACGTCATCAAGGAGAAGTACGGCAAGGATGCCACCAATGTCGGGGATGAAGGCGGATTTTC
CCCCAACATCTTGGCGAACAAAGAAGCCCTGGAGCTGCTGAAGAATGCTATTGGGAAAGCTGGTTACACCGACAAGGTGG
TGATTGGCATGGACGTAGCTGCCTCCGAGTTCTTCAAGTCTGGGAAATACGACCTAGACTTCAAGTCTCCTGATGACCCC
AGCAGGTACATCTCACCTGACCAACTGGCAGACCTGTACAAGTCCTTCATCGCGAACTACCCAGTGGTGTTTATCGAAGA
CCCCTTCGACCAGGATGACTGGGACGCTTGGGCCAAGTTCACTGCCAGTTCAGGGATCCAGGTGGTAGGGGATGATCTCA
CAGTGACCAACCCGAAGCGAATCGCCAAGGCCGTGGGCGAGAAGTCGTGCAACTGCCTCCTGCTCAAAGTGAACCAGATC
GGTTCCGTGACCGAATCTCTGCAGGCGTGCAAGCTGGCCCAGTCCAATGGGTGGGGCGTCATAGTGTCTCATCGTTCTGG
GGAGACCGAGGATGCTTTCATTGCTGACCTGGTGGTGGGACTCTGCACTGGACAGATCAAGACTGGTGCGCCGTGCCGAT
CTGAACGCCTGGCCAAGTACAACCAGATCCTCAGAATTGAAGAGGAGCTGGGCAGCAAGGCCAAGTGTGCTGGCCAGAAG
TTCAGAAATCCC

Alignment

ORF - retro_etel_1837 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.4 %
• Parental protein coverage: 80.65 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKA-GAAERDLPLYRHIAQLAGNS-DLILPVPA
          ..V.EQEK.D.LM.E.DGTENKSKFGANAILGVSLAVCKA.GA.E...PLYRHIA.LAGNS...ILPV.A
Retrocopy VDVTEQEKIDKLMIEMDGTENKSKFGANAILGVSLAVCKA>GAVE*GVPLYRHIADLAGNS>EVILPVAA

Parental  FNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILE
          FNVINGGSHAGNKLAMQEFMILPVGA..F..AMR.GAEVYH.LK.VIK.KYGKDATNVGDEGGF.PNIL.
Retrocopy FNVINGGSHAGNKLAMQEFMILPVGAANFKEAMRIGAEVYHNLKNVIKEKYGKDATNVGDEGGFSPNILA

Parental  NSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPPDPSRCITGDQLGSLYQDFVRNYPV
          N.EALEL.K.AI.KAGYT.K.VIGMDVAASEF...GKYDLDFKSP.DPSR.I..DQL..LY..F..NYPV
Retrocopy NKEALELLKNAIGKAGYTDKVVIGMDVAASEFFKSGKYDLDFKSPDDPSRYISPDQLADLYKSFIANYPV

Parental  VSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKL
          V.IEDPFDQDDW.AW.KFTA..GIQ.VGDDLTVTNPKRI..AV.EK.CNCLLLKVNQIGSVTE..QACKL
Retrocopy VFIEDPFDQDDWDAWAKFTASSGIQVVGDDLTVTNPKRIAKAVGEKSCNCLLLKVNQIGSVTESLQACKL

Parental  AQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGGEARFAGHNFR
          AQ.NGWGV.VSHRSGETED.FIADLVVGLCTGQIKTGAPCRSERLAKYNQ..RIEEELG..A..AG..FR
Retrocopy AQSNGWGVIVSHRSGETEDAFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIEEELGSKAKCAGQKFR

Parental  NP
          NP
Retrocopy NP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1837 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014523	1 retrocopy	retro_cfam_320,
Echinops telfairi	ENSETEG00000007582	8 retrocopies	retro_etel_1077, retro_etel_1696, retro_etel_1837 , retro_etel_2120, retro_etel_227, retro_etel_286, retro_etel_30, retro_etel_544,
Felis catus	ENSFCAG00000004282	1 retrocopy	retro_fcat_1423,
Microcebus murinus	ENSMICG00000001774	1 retrocopy	retro_mmur_362,