RetrogeneDB ID: retro_etel_227

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_3837:3685..4971(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000008367
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENO2
• Ensembl ID: ENSETEG00000007582
• Aliases: None
• Description: enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353]

Sequence

>retro_etel_227
ATGACTATCCTCAACATTCATGCCAGAGAGATCTTTGACTCCTGTGGAAATCCCACCGTTGAGGTCAATCTTTACACTGC
CAAAGGGCTCTTCAGAGCTGCTGTGCCCAGTGGTGCCTCAACTGGGATCTATGAGGCCCTGGAGCTCTGGGACAATGATA
AGACCTGGTATCTGGGCAGAGGTGTCTCAAAGGCTGTTGAGAACATCAATAAAACAATTTCACCTGCCCTGGTTAGCAAG
AAGCTGAATGTTATGGAACAGGAAAAGATCGACAAGCTGATGATTGAGATGGATGGAACTGAGAATAAATCAAAATTTGG
TGCAATGTCATTGTGGGCGTGTCCCTCGCTGCGTACAAGGCTGGAGCTGTTGAGAAGGGAGTCCCCCTATACTGTCACAT
TGCTGACTTGGCTGGCAATTCCAAAGTTATCCTGCCAGTTCCTGCTTTCAATGTGAGCAATGGCAGCTCCCACGATGGCA
ACAAGCTGGTCATGCAGGAATTCATGAACCTCCCTGTTGGAGCAGCCAACTTCAAGGAGGCCATGCGCATTGGGGCTGAG
GTGTACCACAACCTGAGAACGTCATCAAGAAGTACGGCAAGGATACCACCAATGTCGGGGATGAAGGCGGATTTGCCCTC
CAACATCTTGGAGAACAAAGAAGCCCTGGAGCTGCTGAAGAATGCTATTGGGAAAGCTGGTTACACCGACAAGGTGGTGA
TTGGCATGGGCATAGCTGCCTCCGAGTTCTTCAGATCTGGGAAATACGACCTAGACTTCAAGTCTCCTGATGACCCCAGC
AGGTACATCTCACCTGACCAACTGGCAGACCTGTACAAGTCCTTCAACACGGACTACCCAGTGGTGTCTATCGAAGACCC
CTTCGACCAGGATGACTGGGACGCTTGGGCAAAGTTTGCTGCTAGTTCAGGGATCCAGGTGGTAGGGGACAATCTCACAG
TGACCAACCTGAAGTGACTCGCCAAAGTCATGGGCGAGAAGTCGTGCAACTGCCTCCTGCTCAAAGTGAACCAGATCGGT
TCCGTGACAGAGTCTCTGCAGGCGTGCAAGCTGGCCCAGCCCAATGGGTGGGGCGTCATGGTGTCTCATTGTTCTGGGGA
GACCGAGGATACTTTCCTTGCTGACCTGGTGGTGGGACTCTGCACTGGACAGATCAAGATTGGTGCGCCGTGCCAATCTG
AGCACCTGGCCAAGTACAACCAGGTCCTCAGAATTGAAGAAGAGCTGGGAAGCAAGGCCAAGTTTGCTGGCCAGTTCATA
AATCCC

Alignment

ORF - retro_etel_227 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.65 %
• Parental protein coverage: 99.31 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MSIEKIWAREILDSRGNPTVEVDLSTAKGLFRAAVPSGASTGIYEALELGDGDKQRYLGQGVLKAVDHIN
          M.I..I.AREI.DS.GNPTVEV.L.TAKGLFRAAVPSGASTGIYEALEL.D.DK..YLG.GV.KAV..IN
Retrocopy MTILNIHAREIFDSCGNPTVEVNLYTAKGLFRAAVPSGASTGIYEALELWDNDKTWYLGRGVSKAVENIN

Parental  STIAPALVSSGLSVVEQEKLDNLMLELDGTENKSKFGA-NAILGVSLAVCKAGAAERDLPLYRHIAQLAG
          .TI.PALVS..L.V.EQEK.D.LM.E.DGTENKSKFGA.N.I.GVSLA..KAGA.E...PLY.HIA.LAG
Retrocopy KTISPALVSKKLNVMEQEKIDKLMIEMDGTENKSKFGA<NVIVGVSLAAYKAGAVEKGVPLYCHIADLAG

Parental  NSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLK-GVIKDKYGKDATNVG
          NS..ILPVPAFNV.NG.SH.GNKL.MQEFM.LPVGA..F..AMR.GAEVYH.L...VIK.KYGKD.TNVG
Retrocopy NSKVILPVPAFNVSNGSSHDGNKLVMQEFMNLPVGAANFKEAMRIGAEVYHNLR<NVIK-KYGKDTTNVG

Parental  DEGGFA-PNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPPDPSRCITGDQLG
          DEGGFA..NILEN.EALEL.K.AI.KAGYT.K.VIGM..AASEF.R.GKYDLDFKSP.DPSR.I..DQL.
Retrocopy DEGGFA>SNILENKEALELLKNAIGKAGYTDKVVIGMGIAASEFFRSGKYDLDFKSPDDPSRYISPDQLA

Parental  SLYQDFVRNYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQI
          .LY..F...YPVVSIEDPFDQDDW.AW.KF.A..GIQ.VGD.LTVTN.K.......EK.CNCLLLKVNQI
Retrocopy DLYKSFNTDYPVVSIEDPFDQDDWDAWAKFAASSGIQVVGDNLTVTNLK*LAKVMGEKSCNCLLLKVNQI

Parental  GSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEEL
          GSVTE..QACKLAQ.NGWGVMVSH.SGETEDTF.ADLVVGLCTGQIK.GAPC.SE.LAKYNQ..RIEEEL
Retrocopy GSVTESLQACKLAQPNGWGVMVSHCSGETEDTFLADLVVGLCTGQIKIGAPCQSEHLAKYNQVLRIEEEL

Parental  GGEARFAGHNFRNP
          G..A.FAG..F.NP
Retrocopy GSKAKFAG-QFINP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_227 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014523	1 retrocopy	retro_cfam_320,
Echinops telfairi	ENSETEG00000007582	8 retrocopies	retro_etel_1077, retro_etel_1696, retro_etel_1837, retro_etel_2120, retro_etel_227 , retro_etel_286, retro_etel_30, retro_etel_544,
Felis catus	ENSFCAG00000004282	1 retrocopy	retro_fcat_1423,
Microcebus murinus	ENSMICG00000001774	1 retrocopy	retro_mmur_362,