RetrogeneDB ID: retro_etel_286

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_4749:148493..149429(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000000569
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ENO2
• Ensembl ID: ENSETEG00000007582
• Aliases: None
• Description: enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353]

Sequence

>retro_etel_286
CAAGCCGGAGCTGTTGAGAAGGGAGTCCCCCTATACCGTCACATTGCTGACTTAGCTGGCAATTCCGAAGTTATCCTGCC
AGTTCCTGCTTTCAATGTGATCAACGGCGGCTCCCATGCCGGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCCG
TCGGGGCAGCCAACTTCAAGGAGGCCATGCGCATCGGGGCCGAGGTATACCACAACCTGAAGAACGTCATCAAGGAGAAG
TATGGCAAGGATGCCACCAATGTCGGGGATGAAGGCGGATTTGCCCCCAACATCTTGGAGAACAAAGAAGCCCTGGAGCT
GCTGAAGAATGCTATTGGGAAAGCTGGTTACACTGACAGGGTGGTGATTGGCATGGACGTAGCTGCCTCCGAGTTCTTCA
AGTCTGGGAAGTACGACTTAGACTTCAAGTCTCCTGATGACCCCAGCAGGTACATCTCACCTGACCAACTGGCAGACCTG
TACAAGTCCTTCATCGCGAACTACCCAGTGGTGTCTATTGAAGACCCCTTCCACCAGGATGACTGGGACGCTTGGGCCAA
GTTCACTGCCAGTTCAGGGATCCAGGTGGTAGGGGATGATCTCACGGTGACCAACCCGAAGCGAATCGCCAAGGCCGTGG
GCGAGAAGTCGTGCAACTGCCTCCTGCTCAAAGTGAACCAGATCGGCTCCGTGACCAAATCGCTGCAGGCGTGCAAGCTG
GCCCAGCCCAATGGATGGGGCGTCATGGTGTCTCATCGTTCTGGGGAGACCGAGGATACTTTCATTGCTGACCTGGTGGT
GGGACTCTGCACTGGACAGATCAAGACTAGTGCGCCGTGCCGATCTGCACGCCTGGCCAAGTACAACCAGATCCTCAGAA
TTGAAGAGGAGCTGGGCAGCAAGGCCAAGTTTGCTGGCCAGAAGTTCAGAAATCCC

Alignment

ORF - retro_etel_286 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.09 %
• Parental protein coverage: 71.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KAGAAERDLPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVY
          .AGA.E...PLYRHIA.LAGNS..ILPVPAFNVINGGSHAGNKLAMQEFMILPVGA..F..AMR.GAEVY
Retrocopy QAGAVEKGVPLYRHIADLAGNSEVILPVPAFNVINGGSHAGNKLAMQEFMILPVGAANFKEAMRIGAEVY

Parental  HTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDL
          H.LK.VIK.KYGKDATNVGDEGGFAPNILEN.EALEL.K.AI.KAGYT...VIGMDVAASEF...GKYDL
Retrocopy HNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELLKNAIGKAGYTDRVVIGMDVAASEFFKSGKYDL

Parental  DFKSPPDPSRCITGDQLGSLYQDFVRNYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIE
          DFKSP.DPSR.I..DQL..LY..F..NYPVVSIEDPF.QDDW.AW.KFTA..GIQ.VGDDLTVTNPKRI.
Retrocopy DFKSPDDPSRYISPDQLADLYKSFIANYPVVSIEDPFHQDDWDAWAKFTASSGIQVVGDDLTVTNPKRIA

Parental  RAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPC
          .AV.EK.CNCLLLKVNQIGSVT...QACKLAQ.NGWGVMVSHRSGETEDTFIADLVVGLCTGQIKT.APC
Retrocopy KAVGEKSCNCLLLKVNQIGSVTKSLQACKLAQPNGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTSAPC

Parental  RSERLAKYNQLMRIEEELGGEARFAGHNFRNP
          RS.RLAKYNQ..RIEEELG..A.FAG..FRNP
Retrocopy RSARLAKYNQILRIEEELGSKAKFAGQKFRNP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_286 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014523	1 retrocopy	retro_cfam_320,
Echinops telfairi	ENSETEG00000007582	8 retrocopies	retro_etel_1077, retro_etel_1696, retro_etel_1837, retro_etel_2120, retro_etel_227, retro_etel_286 , retro_etel_30, retro_etel_544,
Felis catus	ENSFCAG00000004282	1 retrocopy	retro_fcat_1423,
Microcebus murinus	ENSMICG00000001774	1 retrocopy	retro_mmur_362,