RetrogeneDB ID: retro_etel_1077

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_207299:3530..4347(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENO2
• Ensembl ID: ENSETEG00000007582
• Aliases: None
• Description: enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353]

Sequence

>retro_etel_1077
GCCAGCAACAAGCTGGCCATGCAGGAGTTCATGATCCTCCCCGTCGGGGCAGCCAACTTCCAGGAGGCCATGCGCATCGG
GCCGAGGTGTACCACAACCTGAAGAACGTCATCAAGGAAAAGTACGGCAAGGATGCCACCAATGTCGGGGATGAAGGCGG
ATTTGCCCCCAACATCTTGGAGAACAAAGAGGCCCTGGAGCTGCTGAAGAATGCTATTGGGAAAGCTGGTTACACCGACA
AGGTGGTGATTGGCATGGACCTAGCTGCCTCCGAGTCCTTCAGGCCTGGGAAATACGGCCTAGACTTCCAGTCTCCTGAT
GACCCCAGCAGTACATCTCACCTGACCAACTGGCAGACCTGTACAAGTCCTTCATCACGGACTACCCAGTGGTGTCTATC
GAAGACCCCTTCGACCAGGATGACTGGGACGCTTGGGCAAAGTTCACTGCCAGTTCAGGGATCCAGCTGGTAGGGGACGA
TCTCACAGTGACCAACCCGAAGCGAATCGCCAAGGCCGTGGGCGAGAAGTCATGCAGCTGCCTCCTGCTCAAAGTGAACC
AGATCGGCTCCATGACTGAATCTCTGCCGGCGTGCAAGCTGGCCCAGTCCAATGGGTGGGGCGTCATGGTGTCTCATCGT
TCTGGGGAGACCGAGGATACTTTCATTGCTGACCTGGTGGTGGGACTCTGCACTGGACAGATCAAGACTGGTGCTCCGTG
CCGATCTGAACGCCTGGCCAAGTACAACCAGATCCTCAGAATTGAAGAGGAGCTGGGCAGCAAGGCCAAGTTCGCTGGCC
TGAAGTTCAGAAATCCC

Alignment

ORF - retro_etel_1077 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.27 %
• Parental protein coverage: 62.9 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AGNKLAMQEFMILPVGAESFRDAMRLG-AEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELV
          A.NKLAMQEFMILPVGA..F..AMR.G.AEVYH.LK.VIK.KYGKDATNVGDEGGFAPNILEN.EALEL.
Retrocopy ASNKLAMQEFMILPVGAANFQEAMRIG<AEVYHNLKNVIKEKYGKDATNVGDEGGFAPNILENKEALELL

Parental  KEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPPDPS-RCITGDQLGSLYQDFVRNYPVVSIEDPF
          K.AI.KAGYT.K.VIGMD.AASE..R.GKY.LDF.SP.DPS...I..DQL..LY..F...YPVVSIEDPF
Retrocopy KNAIGKAGYTDKVVIGMDLAASESFRPGKYGLDFQSPDDPS<QYISPDQLADLYKSFITDYPVVSIEDPF

Parental  DQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWG
          DQDDW.AW.KFTA..GIQ.VGDDLTVTNPKRI..AV.EK.C.CLLLKVNQIGS.TE...ACKLAQ.NGWG
Retrocopy DQDDWDAWAKFTASSGIQLVGDDLTVTNPKRIAKAVGEKSCSCLLLKVNQIGSMTESLPACKLAQSNGWG

Parental  VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGGEARFAGHNFRNP
          VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ..RIEEELG..A.FAG..FRNP
Retrocopy VMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIEEELGSKAKFAGLKFRNP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1077 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000014523	1 retrocopy	retro_cfam_320,
Echinops telfairi	ENSETEG00000007582	8 retrocopies	retro_etel_1077 , retro_etel_1696, retro_etel_1837, retro_etel_2120, retro_etel_227, retro_etel_286, retro_etel_30, retro_etel_544,
Felis catus	ENSFCAG00000004282	1 retrocopy	retro_fcat_1423,
Microcebus murinus	ENSMICG00000001774	1 retrocopy	retro_mmur_362,