Parental gene:

RPS2, ENSVPAG00000006867

Aliases:None
Description:ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_1710:4647..6428(-)


>ENSVPAG00000006867
GGTCGCGGTCCGAGCCGCGGCCGCGGCCGCGGAGCTCGCGGAGGCAAGGCGGAGGACAAGTGGCTCCCCGTCACCAAGCT
GGGCCGCTTGGTGAAGGACATGAAGATCAAGTCTCTGGAGGAGATATATCTCTTCTCCCTGCCCATCAAGGAATCTGAGA
TCATTGACTTTTTCTTGGGGGCGTCCCTGAAGGACGAGGTTTTGAAGATTATGCCTGTGCAAAAGCAGACCCGTGCTGGC
CAGCGGACCCGGTTCAAGGCATTTGTCGCCATTGGGGATTACAATGGACATGTCGGTTTGGGTGTTAAGTGCTCCAAGGA
GGTAGCCACAGCCATCCGGGGGGCCATCATCCTGGCCAAGCTCTCCATTGTCCCTGTGCGGCGAGGCTATTGGGGGAACA
AGATCGGCAAGCCCCACACTGTTCCTTGCAAGGTGACTGGCCGCTGTGGTTCTGTGCTGGTGCGCCTCATCCCTGCACCC
AGGGGTACTGGCATTGTTTCAGCCCCGGTGCCCAAGAAGCTGCTGATGATGGCTGGTATTGATGACTGCTACACTTCTGC
CAGGGGCTGCACTGCCACGCTGGGCAACTTTGCTAAGGCCACCTTTGATGCCATCTCCAAGACCTACAGCTATCTCACCC
CTGATCTTTGGAAGGAGACTGTGTTCACCAAGTCTCCGTATCAGGAATTCACTGACCATCTTGTAAAGACCCACACCAGA
GTTTCTGTGCAGAGGACCCAGGCTCCAGCTGTGGCCACCACATAG

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000002549 ortholog_one2one 1 retrogene
retro_acar_57,
Bos taurus ENSBTAG00000009535 ortholog_one2one 7 retrogenes
retro_btau_1236, retro_btau_1420, retro_btau_1656, retro_btau_317, retro_btau_590, retro_btau_661, retro_btau_956,
Canis familiaris ENSCAFG00000019472 possible_ortholog 19 retrogenes
retro_cfam_1028, retro_cfam_1252, retro_cfam_1321, retro_cfam_1460, retro_cfam_1560, retro_cfam_1592, retro_cfam_1842, retro_cfam_1848, retro_cfam_1932, retro_cfam_1983, retro_cfam_2007, retro_cfam_2012, retro_cfam_2046, retro_cfam_2053, retro_cfam_2110, retro_cfam_271, retro_cfam_323, retro_cfam_490, retro_cfam_629,
Cavia porcellus ENSCPOG00000011651 possible_ortholog 11 retrogenes
retro_cpor_1030, retro_cpor_1238, retro_cpor_1376, retro_cpor_1469, retro_cpor_1527, retro_cpor_177, retro_cpor_19, retro_cpor_437, retro_cpor_718, retro_cpor_769, retro_cpor_808,
Loxodonta africana ENSLAFG00000004696 ortholog_one2one 11 retrogenes
retro_lafr_1072, retro_lafr_1092, retro_lafr_1103, retro_lafr_174, retro_lafr_284, retro_lafr_327, retro_lafr_376, retro_lafr_75, retro_lafr_801, retro_lafr_812, retro_lafr_917,
Myotis lucifugus ENSMLUG00000011660 possible_ortholog 1 retrogene
retro_mluc_76,
Monodelphis domestica ENSMODG00000016077 possible_ortholog 1 retrogene
retro_mdom_536,
Mustela putorius furo ENSMPUG00000015547 possible_ortholog 11 retrogenes
retro_mputfur_1100, retro_mputfur_1209, retro_mputfur_1212, retro_mputfur_1214, retro_mputfur_1391, retro_mputfur_1497, retro_mputfur_1566, retro_mputfur_369, retro_mputfur_540, retro_mputfur_624, retro_mputfur_931,
Mus musculus ENSMUSG00000044533 possible_ortholog 1 retrogene
retro_mmus_148,
Procavia capensis ENSPCAG00000002090 ortholog_one2one 2 retrogenes
retro_pcap_251, retro_pcap_433,
Rattus norvegicus ENSRNOG00000014179 possible_ortholog 12 retrogenes
retro_rnor_1882, retro_rnor_2191, retro_rnor_2257, retro_rnor_2274, retro_rnor_2903, retro_rnor_438, retro_rnor_631, retro_rnor_681, retro_rnor_690, retro_rnor_809, retro_rnor_810, retro_rnor_878,
Sarcophilus harrisii ENSSHAG00000015213 possible_ortholog 5 retrogenes
retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Tursiops truncatus ENSTTRG00000011393 ortholog_one2one 12 retrogenes
retro_ttru_1341, retro_ttru_1346, retro_ttru_1414, retro_ttru_149, retro_ttru_1762, retro_ttru_1816, retro_ttru_37, retro_ttru_375, retro_ttru_419, retro_ttru_650, retro_ttru_719, retro_ttru_872,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_114 97.13 94.88
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2. retro_vpac_164 79.40 77.95
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3. retro_vpac_220 87.85 71.26
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4. retro_vpac_354 86.35 97.64
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5. retro_vpac_379 84.13 98.03
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6. retro_vpac_518 80.29 81.50
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Download FASTA sequences of all ENSVPAG00000006867 retrocopies