RetrogeneDB ID: retro_mputfur_540

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896918.1:9246759..9247321(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000015547
• Aliases: None
• Description: None

Sequence

>retro_mputfur_540
AGGACCAAGGGCAAGGAGTGAATCCATCACACCAAGCTGGGCCATCTGGTCAAGGACATGAAGATCAAGTCCCTGGAGGA
GATCTATCTCTTTTCCCTGCCTATTAAGGAATCTGAGATCATTGATTTTTTTCCTGGGGGCATACCTCAAGGATGAGGTT
TTAAAGATTTTGCCTATATAAAACCAGACCTGTGCTGGACAGCAGTCTAGGTTTAAGGCATTTGTTGTCATTGGAGATTA
CAATGGACATCTTGGTCTGGGTGTGAAATACCCCAGGAAGGTAGCCACTGCCATCTGTGGGGCCACCATCCTGGCCAAGC
TTTCCATTATCTCCCTTCCGGGATGCTACTGGAGGAATGAGATTGGCAAGCCTACACCATCCCATGTAAGGTGACCAGTG
ACTGTGGCTCTGGCTGATGTGTCTCATCTTTGCCCTCAGAGGTATTGGCATCACTTTAGTCCCTGTGCACAAGAAGCTCC
TGATGATGGCTGGACTGATGACTGCTATACCTTGGCTGGGGCTGCACTGCCACCCTGGGTTAACTTCGCCAAGACTACGT
TT

Alignment

ORF - retro_mputfur_540 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.13 %
• Parental protein coverage: 69.89 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  KAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFF-LGASLKDEVLKIMPVQKQTRAGQRT
          ....KE.I..TKLG.LVKDMKIKSLEEIYLFSLPIKESEIIDFF.LGA.LKDEVLKI.P...QT.AGQ..
Retrocopy RTKGKE*IHHTKLGHLVKDMKIKSLEEIYLFSLPIKESEIIDFF>LGAYLKDEVLKILPI*NQTCAGQQS

Parental  RFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKP-HTVPCKVTGRCGS-
          RFKAFV.IGDYNGH.GLGVK....VATAI.GA.ILAKLSI......YW.N.IGKP..T.PCKVT..CGS.
Retrocopy RFKAFVVIGDYNGHLGLGVKYPRKVATAICGATILAKLSIISLPGCYWRNEIGKP<YTIPCKVTSDCGS<

Parental  VLVRLIPAPRGTGIVSAPVPKKLLMMAGI-DDCYTSAR-GCTATLG-NFAKATF
          .L..LI.A.RG.GI...PV.KKLLMMAG..DDCYT.A..GCTATLG.NFAK.TF
Retrocopy WLMCLIFALRGIGITLVPVHKKLLMMAGL<DDCYTLAG<GCTATLG>NFAKTTF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_540 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_540 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 59 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000002549	1 retrocopy	retro_acar_57,
Bos taurus	ENSBTAG00000009535	7 retrocopies	retro_btau_1236, retro_btau_1420, retro_btau_1656, retro_btau_317, retro_btau_590, retro_btau_661, retro_btau_956,
Loxodonta africana	ENSLAFG00000004696	11 retrocopies	retro_lafr_1072, retro_lafr_1092, retro_lafr_1103, retro_lafr_174, retro_lafr_284, retro_lafr_327, retro_lafr_376, retro_lafr_75, retro_lafr_801, retro_lafr_812, retro_lafr_917,
Macropus eugenii	ENSMEUG00000004508	2 retrocopies	retro_meug_156, retro_meug_2103,
Myotis lucifugus	ENSMLUG00000011660	1 retrocopy	retro_mluc_76,
Monodelphis domestica	ENSMODG00000016077	1 retrocopy	retro_mdom_536,
Mustela putorius furo	ENSMPUG00000015547	11 retrocopies	retro_mputfur_1100, retro_mputfur_1209, retro_mputfur_1212, retro_mputfur_1214, retro_mputfur_1391, retro_mputfur_1497, retro_mputfur_1566, retro_mputfur_369, retro_mputfur_540 , retro_mputfur_624, retro_mputfur_931,
Procavia capensis	ENSPCAG00000002090	2 retrocopies	retro_pcap_251, retro_pcap_433,
Sarcophilus harrisii	ENSSHAG00000015213	5 retrocopies	retro_shar_186, retro_shar_288, retro_shar_456, retro_shar_525, retro_shar_783,
Tursiops truncatus	ENSTTRG00000011393	12 retrocopies	retro_ttru_1341, retro_ttru_1346, retro_ttru_1414, retro_ttru_149, retro_ttru_1762, retro_ttru_1816, retro_ttru_37, retro_ttru_375, retro_ttru_419, retro_ttru_650, retro_ttru_719, retro_ttru_872,
Vicugna pacos	ENSVPAG00000006867	6 retrocopies	retro_vpac_114, retro_vpac_164, retro_vpac_220, retro_vpac_354, retro_vpac_379, retro_vpac_518,