Parental gene:

RPL27A, ENSTBEG00000000046

Aliases:None
Description:ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_4075:48583..51335(+)


>ENSTBEG00000000046
ATGCCATCCAGACTGAGGAAGACCCGGAAACTTCGAGGCCACGTGAGCCACGGCCACGGCCGCATCGGCAAGCACCGGAA
GCATCCCGGAGGCCGGGGTAATGCTGGTGGCATGCATCACCACAGGATCAACTTCGACAAATATCACCCAGGTTACTTTG
GGAAAGTTGGTATGAGGCATTACCACTTAAAGAGGAACCAGAGCTTCTGCCCAACTGTCAACCTTGATAAATTGTGGACC
TTGGTCAGTGAGCAGACACGGGTAAATGCCGCCAAAAACAAGAACGGAGTAGCTCCCATCATTGATGTAGTGCGATCGGG
CTACTACAAAGTTCTAGGGAAAGGAAAACTCCCGAAGCAGCCTGTCATCGTGAAGGCCAAATTCTTCAGCAGGAGAGCCG
AGGAGAAGATTAAGGGTGTAGGGGGTGCTTGTGTCCTGGTGGCTTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004205 possible_ortholog 15 retrogenes
retro_amel_1095, retro_amel_1160, retro_amel_1165, retro_amel_130, retro_amel_1311, retro_amel_1441, retro_amel_1673, retro_amel_393, retro_amel_450, retro_amel_497, retro_amel_521, retro_amel_693, retro_amel_752, retro_amel_966, retro_amel_989,
Bos taurus ENSBTAG00000005349 possible_ortholog 2 retrogenes
retro_btau_126, retro_btau_45,
Canis familiaris ENSCAFG00000006936 possible_ortholog 2 retrogenes
retro_cfam_145, retro_cfam_384,
Callithrix jacchus ENSCJAG00000011775 possible_ortholog 1 retrogene
retro_cjac_211,
Gorilla gorilla ENSGGOG00000001660 possible_ortholog 2 retrogenes
retro_ggor_155, retro_ggor_1785,
Loxodonta africana ENSLAFG00000000425 possible_ortholog 2 retrogenes
retro_lafr_25, retro_lafr_50,
Myotis lucifugus ENSMLUG00000016616 ortholog_one2many 7 retrogenes
retro_mluc_113, retro_mluc_1253, retro_mluc_164, retro_mluc_2123, retro_mluc_2202, retro_mluc_47, retro_mluc_572,
Macaca mulatta ENSMMUG00000021828 possible_ortholog 2 retrogenes
retro_mmul_207, retro_mmul_268,
Mustela putorius furo ENSMPUG00000012532 possible_ortholog 3 retrogenes
retro_mputfur_118, retro_mputfur_1362, retro_mputfur_464,
Mus musculus ENSMUSG00000046364 possible_ortholog 1 retrogene
retro_mmus_40,
Nomascus leucogenys ENSNLEG00000017535 possible_ortholog 1 retrogene
retro_nleu_102,
Oryctolagus cuniculus ENSOCUG00000005442 possible_ortholog 1 retrogene
retro_ocun_12,
Pan troglodytes ENSPTRG00000003333 possible_ortholog 1 retrogene
retro_ptro_33,
Rattus norvegicus ENSRNOG00000014214 ortholog_one2many 10 retrogenes
retro_rnor_132, retro_rnor_193, retro_rnor_1996, retro_rnor_2466, retro_rnor_253, retro_rnor_261, retro_rnor_334, retro_rnor_370, retro_rnor_565, retro_rnor_606,
Sus scrofa ENSSSCG00000014569 possible_ortholog 9 retrogenes
retro_sscr_527, retro_sscr_574, retro_sscr_587, retro_sscr_588, retro_sscr_644, retro_sscr_668, retro_sscr_677, retro_sscr_769, retro_sscr_809,
Tarsius syrichta ENSTSYG00000013207 possible_ortholog 16 retrogenes
retro_tsyr_1103, retro_tsyr_155, retro_tsyr_1591, retro_tsyr_1607, retro_tsyr_1623, retro_tsyr_170, retro_tsyr_1725, retro_tsyr_187, retro_tsyr_204, retro_tsyr_283, retro_tsyr_498, retro_tsyr_50, retro_tsyr_550, retro_tsyr_608, retro_tsyr_612, retro_tsyr_716,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_298 91.22 100.00
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2. retro_tbel_460 80.41 65.54
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3. retro_tbel_544 75.17 100.00
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4. retro_tbel_643 91.28 100.00
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5. retro_tbel_925 74.05 85.81
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6. retro_tbel_937 91.28 100.00
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7. retro_tbel_1093 88.80 83.78
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8. retro_tbel_1101 94.24 93.92
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9. retro_tbel_1148 63.75 51.35
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10. retro_tbel_1152 90.54 100.00
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11. retro_tbel_1223 62.42 95.95
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12. retro_tbel_1338 84.62 68.92
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13. retro_tbel_1639 75.66 99.32
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14. retro_tbel_2017 74.07 53.38
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15. retro_tbel_2606 73.83 100.00
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16. retro_tbel_2777 74.66 97.97
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17. retro_tbel_3111 83.44 99.32
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18. retro_tbel_3496 84.38 64.86
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19. retro_tbel_3881 79.57 61.49
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20. retro_tbel_4566 85.81 100.00
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Download FASTA sequences of all ENSTBEG00000000046 retrocopies