Parental gene:

RPL22L1, ENSSSCG00000027441

Aliases:None
Description:ribosomal protein L22-like 1 [Source:HGNC Symbol;Acc:27610]
Organism:Pig (Sus scrofa)
Coordinates:13:118437978..118499704(-)


>ENSSSCG00000027441
ATGGCGCCGAAGAAAGACAAGAAGCCTAAGAAGTCAACCTGGAAGTTTAATTTGGACCTGACTCATCCAGTAGAAGATGG
AATTTTTGATGCTCGAAATTTTGAACAGTTTCTACGGGAGAAGGTTAAAGTGAATGGAAAAACTGGGAATCTTGGGAATG
TTGTTCACATTGAACACTTCAAGAATAAAATCATGGTTGTTTCTGAGAAACAGTTCTCTAAAAGGTATTTGAAATATCTT
ACCAAGAAATACCTTAAGAAGAACAATCTTCGCGATTGGCTTCGTGTGGTTGCATCTGACAAGGAGACCTATGAACTTCG
TTACTTCCAGATTAGTCAAGATGAAGATGGATCAGAGTCTGAGGACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 3 .45 RPM
SRP014902_testis 41 .73 RPM
SRP018288_heart 12 .65 RPM
SRP018288_kidney 16 .25 RPM
SRP018288_liver 17 .91 RPM
SRP018288_lung 5 .70 RPM
SRP018856_adipose 12 .94 RPM
SRP035408_brain 17 .09 RPM
SRP035408_liver 34 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004730 ortholog_one2many 1 retrogene
retro_amel_7,
Canis familiaris ENSCAFG00000014955 ortholog_one2one 2 retrogenes
retro_cfam_1410, retro_cfam_773,
Callithrix jacchus ENSCJAG00000002427 ortholog_one2one 1 retrogene
retro_cjac_3983,
Cavia porcellus ENSCPOG00000009215 ortholog_one2one 1 retrogene
retro_cpor_1544,
Equus caballus ENSECAG00000018894 ortholog_one2one 1 retrogene
retro_ecab_728,
Erinaceus europaeus ENSEEUG00000011941 ortholog_one2one 5 retrogenes
retro_eeur_436, retro_eeur_60, retro_eeur_602, retro_eeur_676, retro_eeur_691,
Echinops telfairi ENSETEG00000010658 ortholog_one2one 9 retrogenes
retro_etel_1289, retro_etel_1433, retro_etel_1459, retro_etel_151, retro_etel_1680, retro_etel_335, retro_etel_513, retro_etel_800, retro_etel_936,
Homo sapiens ENSG00000163584 ortholog_one2one 1 retrogene
retro_hsap_2929,
Gorilla gorilla ENSGGOG00000001734 ortholog_one2one 1 retrogene
retro_ggor_2031,
Gadus morhua ENSGMOG00000004077 ortholog_one2many 1 retrogene
retro_gmor_10,
Loxodonta africana ENSLAFG00000013220 ortholog_one2one 2 retrogenes
retro_lafr_1121, retro_lafr_682,
Macropus eugenii ENSMEUG00000009484 ortholog_one2many 1 retrogene
retro_meug_390,
Myotis lucifugus ENSMLUG00000023052 ortholog_one2many 2 retrogenes
retro_mluc_1183, retro_mluc_1588,
Myotis lucifugus ENSMLUG00000027683 ortholog_one2many 8 retrogenes
retro_mluc_1225, retro_mluc_1403, retro_mluc_1690, retro_mluc_1804, retro_mluc_1967, retro_mluc_2383, retro_mluc_2401, retro_mluc_668,
Macaca mulatta ENSMMUG00000022881 ortholog_one2one 2 retrogenes
retro_mmul_1927, retro_mmul_1954,
Mus musculus ENSMUSG00000039221 ortholog_one2one 4 retrogenes
retro_mmus_1380, retro_mmus_2633, retro_mmus_2674, retro_mmus_3631,
Nomascus leucogenys ENSNLEG00000005287 ortholog_one2one 2 retrogenes
retro_nleu_1918, retro_nleu_2266,
Oryctolagus cuniculus ENSOCUG00000014962 ortholog_one2many 2 retrogenes
retro_ocun_1, retro_ocun_256,
Otolemur garnettii ENSOGAG00000012642 ortholog_one2one 2 retrogenes
retro_ogar_1434, retro_ogar_780,
Procavia capensis ENSPCAG00000008704 ortholog_one2one 1 retrogene
retro_pcap_105,
Pongo abelii ENSPPYG00000025900 ortholog_one2one 1 retrogene
retro_pabe_2524,
Pteropus vampyrus ENSPVAG00000011524 ortholog_one2one 1 retrogene
retro_pvam_328,
Rattus norvegicus ENSRNOG00000011817 ortholog_one2many 2 retrogenes
retro_rnor_111, retro_rnor_2152,
Sus scrofa ENSSSCG00000003367 within_species_paralog 4 retrogenes
retro_sscr_257, retro_sscr_276, retro_sscr_497, retro_sscr_509,
Ictidomys tridecemlineatus ENSSTOG00000022972 ortholog_one2one 3 retrogenes
retro_itri_1511, retro_itri_1533, retro_itri_492,
Tupaia belangeri ENSTBEG00000000357 ortholog_one2one 17 retrogenes
retro_tbel_1135, retro_tbel_1188, retro_tbel_2011, retro_tbel_2073, retro_tbel_2081, retro_tbel_226, retro_tbel_2325, retro_tbel_2333, retro_tbel_2434, retro_tbel_2936, retro_tbel_3526, retro_tbel_3796, retro_tbel_4070, retro_tbel_4372, retro_tbel_4573, retro_tbel_4681, retro_tbel_575,
Tursiops truncatus ENSTTRG00000007035 ortholog_one2one 3 retrogenes
retro_ttru_1180, retro_ttru_168, retro_ttru_968,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_85 62.39 89.34
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2. retro_sscr_129 54.76 65.57
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3. retro_sscr_141 72.62 66.39
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4. retro_sscr_860 76.64 87.70
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5. retro_sscr_1039 95.12 100.00
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Download FASTA sequences of all ENSSSCG00000027441 retrocopies