Parental gene:

ENSSSCG00000008183

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:57676951..57688381(-)


>ENSSSCG00000008183
ATGGCGGGGATTTTGCGCTCAGTAGTTCAGAGGCCCCCAGGCAGACTACAAACGGTGACAAAAGGCATGGAATCTCTCAT
TTGTACAGATTGGATTCGTCACAAATTTACAAGGTCAAGAATTCCAGATAAAGTTTTTCAGCCTTCACCTGAAGATCATG
AAAAATATGGTGGGGATCCACAGTACCCTCATAAACTGCATATCGTTACCAGAATAAAAAGTACAAAAAGACGTCCATAT
TGGGAGAAAGATATAATAAAGATGCTTGGATTAGAAAAAGCACACACTCCTCAAGTTCACAAGAATATCCCTTCAGTGAA
TGCAAAACTGAAAGTGGTTAAACATTTGATAAGGATCAAGCCCCTGAAGCTGCCACAAGGTCTTCCGACAGAGGAGGACA
TGGCCAACACGTGCCTCAAAAGCAATGGGGAGCTGGTAGTGCGGTGGCTTCTAAACCCTGCCAACCAGGAAGCGAGGAAG
TCCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .83 RPM
SRP014902_testis 11 .17 RPM
SRP018288_heart 45 .00 RPM
SRP018288_kidney 30 .34 RPM
SRP018288_liver 18 .23 RPM
SRP018288_lung 13 .34 RPM
SRP018856_adipose 35 .87 RPM
SRP035408_brain 64 .47 RPM
SRP035408_liver 34 .14 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013344 ortholog_one2one 1 retrogene
retro_amel_1121,
Bos taurus ENSBTAG00000038949 ortholog_one2one 1 retrogene
retro_btau_1542,
Canis familiaris ENSCAFG00000031628 ortholog_one2many 1 retrogene
retro_cfam_1703,
Choloepus hoffmanni ENSCHOG00000005804 ortholog_one2one 2 retrogenes
retro_chof_2339, retro_chof_715,
Callithrix jacchus ENSCJAG00000007085 ortholog_one2one 1 retrogene
retro_cjac_758,
Dasypus novemcinctus ENSDNOG00000018648 ortholog_one2one 5 retrogenes
retro_dnov_1430, retro_dnov_1469, retro_dnov_2019, retro_dnov_2348, retro_dnov_571,
Equus caballus ENSECAG00000015993 ortholog_one2one 1 retrogene
retro_ecab_309,
Echinops telfairi ENSETEG00000005006 ortholog_one2one 4 retrogenes
retro_etel_168, retro_etel_2176, retro_etel_232, retro_etel_605,
Felis catus ENSFCAG00000024233 ortholog_one2one 4 retrogenes
retro_fcat_1430, retro_fcat_196, retro_fcat_528, retro_fcat_669,
Homo sapiens ENSG00000241962 ortholog_one2many 2 retrogenes
retro_hsap_3476, retro_hsap_981,
Gorilla gorilla ENSGGOG00000011677 ortholog_one2one 2 retrogenes
retro_ggor_2343, retro_ggor_783,
Microcebus murinus ENSMICG00000011627 ortholog_one2one 4 retrogenes
retro_mmur_109, retro_mmur_1281, retro_mmur_61, retro_mmur_897,
Myotis lucifugus ENSMLUG00000029851 ortholog_one2one 2 retrogenes
retro_mluc_1543, retro_mluc_1786,
Mustela putorius furo ENSMPUG00000011085 ortholog_one2one 1 retrogene
retro_mputfur_214,
Mus musculus ENSMUSG00000026087 ortholog_one2one 7 retrogenes
retro_mmus_1171, retro_mmus_1367, retro_mmus_1758, retro_mmus_331, retro_mmus_3680, retro_mmus_3724, retro_mmus_755,
Nomascus leucogenys ENSNLEG00000026974 ortholog_one2one 2 retrogenes
retro_nleu_2761, retro_nleu_337,
Oryctolagus cuniculus ENSOCUG00000004111 ortholog_one2one 1 retrogene
retro_ocun_1946,
Otolemur garnettii ENSOGAG00000002241 ortholog_one2many 11 retrogenes
retro_ogar_1328, retro_ogar_1429, retro_ogar_2160, retro_ogar_2277, retro_ogar_2389, retro_ogar_3516, retro_ogar_401, retro_ogar_466, retro_ogar_549, retro_ogar_879, retro_ogar_908,
Ochotona princeps ENSOPRG00000007331 ortholog_one2one 2 retrogenes
retro_opri_826, retro_opri_989,
Pan troglodytes ENSPTRG00000012275 ortholog_one2one 2 retrogenes
retro_ptro_2356, retro_ptro_765,
Pteropus vampyrus ENSPVAG00000006587 ortholog_one2one 5 retrogenes
retro_pvam_1469, retro_pvam_1484, retro_pvam_321, retro_pvam_432, retro_pvam_764,
Rattus norvegicus ENSRNOG00000018511 ortholog_one2many 6 retrogenes
retro_rnor_2018, retro_rnor_2683, retro_rnor_2684, retro_rnor_2873, retro_rnor_570, retro_rnor_916,
Rattus norvegicus ENSRNOG00000049330 ortholog_one2many 1 retrogene
retro_rnor_2976,
Tarsius syrichta ENSTSYG00000005345 ortholog_one2one 4 retrogenes
retro_tsyr_1736, retro_tsyr_2153, retro_tsyr_368, retro_tsyr_866,
Tursiops truncatus ENSTTRG00000004937 ortholog_one2one 3 retrogenes
retro_ttru_1126, retro_ttru_1379, retro_ttru_78,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_529 70.94 72.67
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2. retro_sscr_555 70.09 72.67
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Download FASTA sequences of all ENSSSCG00000008183 retrocopies