Parental gene:

TCEB2, ENSSSCG00000008061

Aliases:None
Description:transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) [Source:HGNC Symbol;Acc:11619]
Organism:Pig (Sus scrofa)
Coordinates:3:40632307..40636157(-)


>ENSSSCG00000008061
ATGGACGTGTTCCTCATGATCCGGCGCCACAAGACCACCATCTTCACTGACGCTAAGGAGTCGAGTACCGTGTTCGAGCT
GAAGCGCATCGTCGAGGGCATCCTCAAGCGGCCGCCGGACGAGCAGCGGCTGTACAAGGACGACCAGCTTCTGGATGACG
GCAAGACCTTGGGCGAGTGCGGCTTCACCAGCCAGACCGCGCGGCCTCAGGCCCCAGCCACCGTGGGGCTGGCCTTCCGG
GCAGATGAAGCGTTCGAGGCCCTGCGCATTGAGCCCTTCTCCAGCCCGCCTGAGCTGCCCGACGTGATGAAGCCGCAGGA
CTCAGGAAGCAGCGCCAATGAACAAGCTGTGCAGTGA

Library Parental gene expression (RPM)
SRP014902_placenta 104 .06 RPM
SRP014902_testis 144 .42 RPM
SRP018288_heart 53 .12 RPM
SRP018288_kidney 81 .07 RPM
SRP018288_liver 55 .49 RPM
SRP018288_lung 73 .11 RPM
SRP018856_adipose 78 .89 RPM
SRP035408_brain 99 .98 RPM
SRP035408_liver 74 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019543 ortholog_one2many 3 retrogenes
retro_btau_142, retro_btau_17, retro_btau_29,
Callithrix jacchus ENSCJAG00000015347 ortholog_one2many 10 retrogenes
retro_cjac_1593, retro_cjac_1606, retro_cjac_2051, retro_cjac_2613, retro_cjac_2987, retro_cjac_3030, retro_cjac_342, retro_cjac_3819, retro_cjac_639, retro_cjac_959,
Cavia porcellus ENSCPOG00000021024 ortholog_one2one 1 retrogene
retro_cpor_1416,
Felis catus ENSFCAG00000004711 ortholog_one2many 2 retrogenes
retro_fcat_112, retro_fcat_40,
Homo sapiens ENSG00000103363 ortholog_one2one 2 retrogenes
retro_hsap_1246, retro_hsap_940,
Gorilla gorilla ENSGGOG00000015306 ortholog_one2many 1 retrogene
retro_ggor_976,
Monodelphis domestica ENSMODG00000016536 ortholog_one2many 4 retrogenes
retro_mdom_1149, retro_mdom_1617, retro_mdom_1964, retro_mdom_23,
Mus musculus ENSMUSG00000055839 ortholog_one2one 7 retrogenes
retro_mmus_1212, retro_mmus_1489, retro_mmus_1664, retro_mmus_2930, retro_mmus_511, retro_mmus_747, retro_mmus_99,
Nomascus leucogenys ENSNLEG00000009471 ortholog_one2many 2 retrogenes
retro_nleu_295, retro_nleu_89,
Oryctolagus cuniculus ENSOCUG00000010116 ortholog_one2many 2 retrogenes
retro_ocun_202, retro_ocun_930,
Pongo abelii ENSPPYG00000007013 ortholog_one2many 1 retrogene
retro_pabe_74,
Pan troglodytes ENSPTRG00000007663 ortholog_one2many 1 retrogene
retro_ptro_857,
Rattus norvegicus ENSRNOG00000004814 ortholog_one2many 6 retrogenes
retro_rnor_1226, retro_rnor_1275, retro_rnor_185, retro_rnor_1948, retro_rnor_35, retro_rnor_352,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_858 51.11 71.19
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Download FASTA sequences of all ENSSSCG00000008061 retrocopies