Parental gene:

TPI1, ENSRNOG00000050669

Aliases:None
Description:None
Organism:Rat (Rattus norvegicus)
Coordinates:9:19089751..19092584(+)


>ENSRNOG00000050669
ATGGCGCCTTCCAGGAAGTTCTTCGTCGGGGGCAACTGGAAGATGAACGGGAGGAAGAAATGCCTGGGAGAACTCATCTG
CACTCTGAACGCAGCCAAGCTGCCGGCAGACACCGAGGTGGTTTGTGCACCGCCAACCGCCTACATCGACTTTGCCAGGC
AGAAGCTGGATCCCAAAATTGCTGTGGCTGCACAGAACTGCTACAAAGTGACCAATGGGGCCTTCACTGGGGAAATCAGT
CCTGGCATGATCAAGGACTTAGGAGCTACCTGGGTGGTGCTGGGACACTCTGAAAGAAGACACATCTTTGGGGAATCAGA
CGAGTTGATTGGGCAGAAAGTGAACCATGCCCTATCCGAGGGACTCGGAGTGATCGCCTGCATTGGGGAGAAGTTAGACG
AAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTTGAGCAAACCAAGGCCATCGCAGATAATGTGAAGGACTGGTGCAAG
GTGGTCCTGGCCTATGAACCAGTATGGGCCATTGGGACTGGCAAGACTGCAACCCCTCAACAGGCCCAGGAAGTACACGA
GAAGCTCCGGGGATGGCTGAAATGCAACGTCTCTGAGGGGGTGGCTCAGTGCACTCGGATCATTTATGGAGGTTCTGTGA
CTGGAGCGACTTGCAAAGAGCTGGCAAGCCAGCCTGATGTGGATGGCTTCCTCGTGGGCGGTGCATCTCTCAAGCCTGAA
TTCGTGGACATTATCAATGCCAAACAATGA

Library Parental gene expression (RPM)
SRP017611_brain 0 .22 RPM
SRP017611_kidney 0 .07 RPM
SRP017611_liver 0 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007348 ortholog_one2many 2 retrogenes
retro_cjac_2190, retro_cjac_2370,
Homo sapiens ENSG00000111669 ortholog_one2many 3 retrogenes
retro_hsap_3038, retro_hsap_3510, retro_hsap_3784,
Gorilla gorilla ENSGGOG00000002623 ortholog_many2many 1 retrogene
retro_ggor_151,
Macropus eugenii ENSMEUG00000006977 ortholog_one2many 5 retrogenes
retro_meug_1348, retro_meug_1520, retro_meug_1934, retro_meug_267, retro_meug_512,
Myotis lucifugus ENSMLUG00000024989 ortholog_one2many 4 retrogenes
retro_mluc_1090, retro_mluc_1311, retro_mluc_1777, retro_mluc_1807,
Macaca mulatta ENSMMUG00000005194 ortholog_many2many 2 retrogenes
retro_mmul_1864, retro_mmul_250,
Mustela putorius furo ENSMPUG00000016774 ortholog_many2many 1 retrogene
retro_mputfur_136,
Mus musculus ENSMUSG00000023456 ortholog_one2many 4 retrogenes
retro_mmus_1180, retro_mmus_3260, retro_mmus_532, retro_mmus_558,
Nomascus leucogenys ENSNLEG00000004821 ortholog_one2many 2 retrogenes
retro_nleu_1120, retro_nleu_847,
Otolemur garnettii ENSOGAG00000031254 ortholog_many2many 1 retrogene
retro_ogar_109,
Pongo abelii ENSPPYG00000004207 ortholog_many2many 1 retrogene
retro_pabe_2902,
Pan troglodytes ENSPTRG00000004595 ortholog_one2many 4 retrogenes
retro_ptro_160, retro_ptro_1999, retro_ptro_2382, retro_ptro_2565,
Rattus norvegicus ENSRNOG00000015290 within_species_paralog 1 retrogene
retro_rnor_1304,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_787 75.00 50.60
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2. retro_rnor_2615 97.99 100.00
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Download FASTA sequences of all ENSRNOG00000050669 retrocopies