Parental gene:

Vdac2, ENSRNOG00000013505

Aliases:None
Description:Voltage-dependent anion-selective channel protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P81155]
Organism:Rat (Rattus norvegicus)
Coordinates:15:2615636..2629307(-)


>ENSRNOG00000013505
ATGGCTGAATGTTGTGTACCGGTATGCCAACGGCCAATTTGTATCCCTCCACCCTATGCTGACCTTGGCAAAGCTGCCAG
AGATATTTTCAACAAAGGATTTGGTTTTGGGTTGGTAAAGCTGGATGTGAAAACGAAGTCATGCAGTGGTGTGGAATTTT
CAACATCTGGCTCATCTAATACAGACACTGGTAAAGTCAGTGGGACCTTGGAGACCAAGTACAAATGGTGTGAGTATGGT
CTGACTTTCACAGAGAAATGGAACACTGACAACACTCTGGGGACGGAGATTGCAATTGAAGACCAGATTTGTCAAGGTTT
GAAACTGACCTTTGACACCACGTTTTCACCAAACACAGGAAAGAAAAGTGGTAAAATCAAGTCTGCTTACAAGAGGGAAT
GTATAAACCTTGGCTGTGATGTTGATTTTGATTTTGCTGGACCTGCCATCCATGGGTCAGCCGTCTTTGGTTACGAGGGC
TGGCTTGCTGGGTACCAGATGACCTTTGACAGTGCCAAGTCAAAGCTGACAAGGAGTAACTTCGCAGTTGGCTACAGGAC
TGGGGACTTCCAGCTACACACAAATGTAAATAATGGGACAGAATTTGGAGGATCAATTTATCAGAAAGTATGTGAAGATT
TTGACACTTCAGTAAACCTTGCTTGGACATCAGGTACCAACTGCACTCGTTTTGGCATTGCAGCTAAATACCAGTTGGAC
CCCACTGCTTCTATTTCTGCAAAGGTCAACAACTCTAGTTTAATTGGAGTGGGCTATACTCAGACTCTGAGGCCTGGTGT
GAAGCTTACACTGTCTGCTCTGGTAGACGGGAAGAGCTTTAATGCTGGAGGCCACAAACTTGGGCTTGCCTTGGAATTGG
AGGCTTAA

Library Parental gene expression (RPM)
SRP017611_brain 146 .52 RPM
SRP017611_kidney 191 .90 RPM
SRP017611_liver 56 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012975 ortholog_one2many 2 retrogenes
retro_btau_1252, retro_btau_1389,
Canis familiaris ENSCAFG00000015398 ortholog_one2many 1 retrogene
retro_cfam_376,
Callithrix jacchus ENSCJAG00000001145 ortholog_one2many 1 retrogene
retro_cjac_2385,
Erinaceus europaeus ENSEEUG00000008623 possible_ortholog 2 retrogenes
retro_eeur_192, retro_eeur_343,
Felis catus ENSFCAG00000026943 ortholog_one2many 3 retrogenes
retro_fcat_1385, retro_fcat_804, retro_fcat_815,
Homo sapiens ENSG00000165637 ortholog_one2many 1 retrogene
retro_hsap_2114,
Gorilla gorilla ENSGGOG00000005861 ortholog_one2many 5 retrogenes
retro_ggor_1677, retro_ggor_1949, retro_ggor_2934, retro_ggor_3036, retro_ggor_425,
Macropus eugenii ENSMEUG00000012995 possible_ortholog 1 retrogene
retro_meug_30,
Microcebus murinus ENSMICG00000017815 possible_ortholog 1 retrogene
retro_mmur_191,
Myotis lucifugus ENSMLUG00000007500 ortholog_one2many 2 retrogenes
retro_mluc_1710, retro_mluc_2252,
Macaca mulatta ENSMMUG00000008691 possible_ortholog 1 retrogene
retro_mmul_2200,
Mustela putorius furo ENSMPUG00000003268 ortholog_one2many 1 retrogene
retro_mputfur_354,
Mus musculus ENSMUSG00000021771 ortholog_one2many 1 retrogene
retro_mmus_2667,
Nomascus leucogenys ENSNLEG00000016857 possible_ortholog 1 retrogene
retro_nleu_1608,
Otolemur garnettii ENSOGAG00000030039 ortholog_one2many 1 retrogene
retro_ogar_2116,
Rattus norvegicus ENSRNOG00000006375 within_species_paralog 8 retrogenes
retro_rnor_1235, retro_rnor_1398, retro_rnor_1482, retro_rnor_1594, retro_rnor_1664, retro_rnor_776, retro_rnor_777, retro_rnor_947,
Rattus norvegicus ENSRNOG00000019277 within_species_paralog 1 retrogene
retro_rnor_1596,
Sorex araneus ENSSARG00000011194 possible_ortholog 2 retrogenes
retro_sara_300, retro_sara_59,
Sarcophilus harrisii ENSSHAG00000012048 ortholog_one2many 1 retrogene
retro_shar_325,
Sus scrofa ENSSSCG00000010320 possible_ortholog 2 retrogenes
retro_sscr_681, retro_sscr_791,
Tupaia belangeri ENSTBEG00000001946 possible_ortholog 4 retrogenes
retro_tbel_1504, retro_tbel_1541, retro_tbel_1885, retro_tbel_4597,
Tarsius syrichta ENSTSYG00000004764 possible_ortholog 1 retrogene
retro_tsyr_14,
Tursiops truncatus ENSTTRG00000000371 possible_ortholog 3 retrogenes
retro_ttru_116, retro_ttru_1172, retro_ttru_776,
Vicugna pacos ENSVPAG00000008068 possible_ortholog 1 retrogene
retro_vpac_156,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2652 85.25 61.69
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Download FASTA sequences of all ENSRNOG00000013505 retrocopies