Parental gene:

Sec13, ENSRNOG00000010628

Aliases:Sec13, Sec13l1
Description:None
Organism:Rat (Rattus norvegicus)
Coordinates:4:208982589..208995976(-)


>ENSRNOG00000010628
ATGGTGTCAGTAATTAACACTGTGGATACCTCTCATGAGGACATGATTCATGATGCGCAGATGGACTATTATGGCACCCG
CCTAGCAACCTGCTCCTCAGATAGGTCTGTCAAAATTTTTGATGTGCGAAATGGAGGGCAGATCCTCATCGCAGACCTCA
GAGGACATGAGGGGCCAGTGTGGCAGGTGGCCTGGGCTCACCCCATGTATGGCAATATCCTGGCTTCCTGTTCCTATGAC
CGGAAAGTCATTATCTGGAAGGAGGAAAATGGCACTTGGGAAAAGACCCATGAGCACTCAGGACATGACTCCTCAGTGAA
CTCTGTTTGCTGGGCCCCTCATGACTATGGCCTGATCCTGGCCTGTGGGAGTTCAGATGGTGCCATCTCGCTGCTGACTT
ATACAGGGGAAGGCCAGTGGGAAGTGAAGAAGATTAACAATGCTCACACGATTGGCTGTAATGCTGTCAGTTGGGCCCCA
GCTGTTGTGCCTGGAAGCCTTATAGACCAACCATCCGGACAGAAACCCAATTACATCAAGAAGTTTGCATCAGGTGGCTG
TGACAATCTCATCAAGTTGTGGAGGGAAGAGGAGGATGGCCAGTGGAAGGAGGAGCAAAAGCTAGAGGCACACAGTGACT
GGGTTCGAGACGTTGCCTGGGCCCCCTCCATTGGCTTGCCCACCAGCACCATTGCCAGCTGCTCTCAGGATGGGCGAGTG
TTTATTTGGACTTGTGATGACGCCTCAGGCAATATGTGGTCACCTAAACTCCTACACAAGTTCAATGATGTCGTGTGGCA
CGTGAGCTGGTCCATCACAGCAAATATCCTGGCTGTGTCAGGTGGAGACAATAAGGTGACCCTGTGGAAAGAGTCGGTGG
ATGGACAGTGGGTGTGCATCAGTGATGTCAACAAGGGCCAGGGTTCTGTGTCAGCCTCCATCACAGAGGGCCAACAGAAT
GAGCAATGA

Library Parental gene expression (RPM)
SRP017611_brain 20 .56 RPM
SRP017611_kidney 52 .62 RPM
SRP017611_liver 32 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005118 ortholog_one2many 1 retrogene
retro_cfam_278,
Callithrix jacchus ENSCJAG00000016439 ortholog_one2many 2 retrogenes
retro_cjac_1574, retro_cjac_908,
Felis catus ENSFCAG00000011245 ortholog_one2many 1 retrogene
retro_fcat_541,
Homo sapiens ENSG00000157020 ortholog_one2many 1 retrogene
retro_hsap_2630,
Microcebus murinus ENSMICG00000002401 ortholog_one2many 1 retrogene
retro_mmur_1509,
Mus musculus ENSMUSG00000030298 ortholog_one2many 2 retrogenes
retro_mmus_2159, retro_mmus_3443,
Nomascus leucogenys ENSNLEG00000004482 ortholog_one2many 1 retrogene
retro_nleu_642,
Otolemur garnettii ENSOGAG00000017050 ortholog_one2many 1 retrogene
retro_ogar_1655,
Pongo abelii ENSPPYG00000013658 ortholog_one2many 1 retrogene
retro_pabe_2333,
Pan troglodytes ENSPTRG00000014619 ortholog_one2many 1 retrogene
retro_ptro_1774,
Tursiops truncatus ENSTTRG00000004395 ortholog_one2many 1 retrogene
retro_ttru_917,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1375 95.04 81.37
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2. retro_rnor_1454 95.04 81.37
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Download FASTA sequences of all ENSRNOG00000010628 retrocopies