Parental gene:

SEC13, ENSCAFG00000005118

Aliases:None
Description:SEC13 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:10697]
Organism:Dog (Canis familiaris)
Coordinates:20:8041435..8074738(+)


>ENSCAFG00000005118
ATGGTGTCAGTAATTAACACTGTGGACACCTCCCATGAGGATATGATTCACGATGCCCAGATGGACTACTATGGCACCCG
CCTGGCAACCTGCTCCTCAGACAGGTCCGTCAAAATCTTCGATGTGCGAAATGGAGGACAGATCCTCATTGCCGACCTCA
GAGGTCACGAGGGTCCTGTGTGGCAAGTGGCCTGGGCCCACCCCATGTATGGCAACATCCTGGCATCCTGCTCCTATGAC
CGGAAGGTCATTATCTGGAAGGAGGAAAATGGCACCTGGGAGAAGACACACGAGCACACAGGACATGACTCCTCAGTAAA
CTCTGTGTGCTGGGCCCCCCATGACTACGGCCTAATACTGGCCTGTGGGAGCTCAGATGGGGCCATCTCCCTGCTGACAT
ACACCGGAGAGGGCCAGTGGGAAGTAAAGAAGATCAACAATGCTCATACTATTGGCTGCAACGCCGTCAGTTGGGCCCCT
GCTGTTGTACCTGGAAGCCTTATAGACCAGCCATCGGGACAGAAGCCCAACTACATCAAGAAGTTTGCTTCGGGTGGCTG
TGACAACCTCATCAAACTGTGGAAGGAGGAGGAGGATGGCCAGTGGAAGGAGGAACAGAAACTAGAAGCGCACAGTGACT
GGGTTCGAGATGTGGCCTGGGCCCCCTCCATTGGCTTGCCTACCAGCACCATCGCCAGTTGCTCCCAGGACGGTCGTGTG
TTCATCTGGACTTGTGATGACACCTCAGGCAATACATGGTCACCCAAACTGTTGCACAAGTTCAATGATGTTGTGTGGCA
TGTGAGCTGGTCTATCACAGCCAACATCCTGGCTGTCTCGGGCGGAGACAATAAGGTGACCCTGTGGAAGGAGTCTGTTG
ACGGACAGTGGGTGTGCATCAGTGATGTCAACAAGGGCCAGGGATCCGTGTCTGCTTCTGTCACAGAGGGCCAGCAGAAC
GAGCAGTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 30 .11 RPM
SRP017611_brain 20 .72 RPM
SRP017611_kidney 56 .86 RPM
SRP017611_liver 16 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016439 ortholog_one2one 2 retrogenes
retro_cjac_1574, retro_cjac_908,
Felis catus ENSFCAG00000011245 ortholog_one2one 1 retrogene
retro_fcat_541,
Homo sapiens ENSG00000157020 ortholog_one2one 1 retrogene
retro_hsap_2630,
Microcebus murinus ENSMICG00000002401 ortholog_one2one 1 retrogene
retro_mmur_1509,
Mus musculus ENSMUSG00000030298 ortholog_one2one 2 retrogenes
retro_mmus_2159, retro_mmus_3443,
Nomascus leucogenys ENSNLEG00000004482 ortholog_one2one 1 retrogene
retro_nleu_642,
Otolemur garnettii ENSOGAG00000017050 ortholog_one2one 1 retrogene
retro_ogar_1655,
Pongo abelii ENSPPYG00000013658 ortholog_one2one 1 retrogene
retro_pabe_2333,
Pan troglodytes ENSPTRG00000014619 ortholog_one2one 1 retrogene
retro_ptro_1774,
Rattus norvegicus ENSRNOG00000010628 ortholog_one2many 2 retrogenes
retro_rnor_1375, retro_rnor_1454,
Tursiops truncatus ENSTTRG00000004395 ortholog_one2one 1 retrogene
retro_ttru_917,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_278 93.45 89.44
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Download FASTA sequences of all ENSCAFG00000005118 retrocopies